Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00296 ATGATGATGGGTTTCAGTAATAGTTGTTATAGCAGGTCACCTTTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATCTTCAAGTACATGGTTGCAGGTCTTCCTGTTCCTCCTGATCTTGTGCTTCCCATTCAGAAGAGCTTCGAGTCTATTTCACAATCCTTCTTTCAACATCCCACTTTTGCAGTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATATCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCCCAAACTATGACACAGTCATCATCCACTGTGACATCACTGACTGTCACTGGCGGCAGCAATAGAACTGGAAACTTCCAGAACCTTCCCACAAATGCCTTTGGTAATCTCCAAGGTACTGGTTCTGGAACCGACCGTACTGATTATCATCTAGATTCCATTCCCTATGGAATTCCAAGTAAAGAATACAGGTATCTTCAAGGGCTTAAATCTGAGGGTGGAGAACATAGCTTCTTTTCTGAAGCTTCAGGAAGCAACAAGGTTCTCCAGATGGAGTCACAGCTGGAAAACACATGGCCTTTAATGTCAACTAGAGTTGCCTCTTTTTCTGCATCAAAATCAAGTAATAATTCCATGTTGCAGAGTGATTATCCCCAGCATTCATTTTTATCTAGTGACTATGCATCAGGGGAAGCTATGAAGGAGGAAGGCCAGCCTCTTCGACCTTTTTTCAATGAATGGCCTAAAGGAAGGGATTCATGGTCTGGTCTGGAAGATGAGAGATCCAACCAAACAGCCTTCTCCACAACTCAGCTCTCAATATCCATTCCAATGTCATCTTCTGACTTCTCTGCAACAAGCTCTCAATCCCCACATGGTGAGATTTATTTTTTAGCTGAAGTTTCAGCTTGTTAG 996 0.4488 MMMGFSNSCYSRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFESISQSFFQHPTFAVSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTSLTVTGGSNRTGNFQNLPTNAFGNLQGTGSGTDRTDYHLDSIPYGIPSKEYRYLQGLKSEGGEHSFFSEASGSNKVLQMESQLENTWPLMSTRVASFSASKSSNNSMLQSDYPQHSFLSSDYASGEAMKEEGQPLRPFFNEWPKGRDSWSGLEDERSNQTAFSTTQLSISIPMSSSDFSATSSQSPHGEIYFLAEVSAC. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00296 331 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Seca5g00296 331 MobiDBLite consensus disorder prediction 118 167 - -
Seca5g00296 331 Pfam QLQ 14 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca5g00296 331 Pfam WRC 78 120 IPR014977 -
Seca5g00296 331 ProSiteProfiles QLQ domain profile. 14 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca5g00296 331 SMART QLQ_2 13 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca5g00296 331 PANTHER GROWTH-REGULATING FACTOR 5 13 309 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca5g00296 331 MobiDBLite consensus disorder prediction 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00296 Seca-Chr5 6143200 6146708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00296 2 141 GRF Transcription Factor Family AT3G13960 54.225 5.66e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca5g00296 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00296 - - gmx:100787226 518.85