Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00293 ATGGCCCCTTCTTCTCTGAGTATTGCTGATTCACAGTCTTCGTCAACAGCACCCGGAGTCGCAGAGAACGATCTTCAGCCATTTTTTGTTCTTCATAAAGCTTCATCGCGAAGAAAAGATAGAACATCAACAGAACAGGGAAAATTGCGCAAGAGAGATGAGCTATCTTCATCACCACCACCACAAAGTGCAAAGAAACTGGCAGGACGTACAACTGAAGAATGTGATCACCATTTGTTTCAGCAACTACAGATTGAAACTTTTGAAATTGTTTGGGCAAAGATTGAATCTACCATTAAGGACGTTTTGAGAGATCTCAATGCTAGTGTATTTAATGATATACAACAATGGGTTCTGGAGTGCTTCAATGCTACAACATTGCTTGGAGAACCAAGTATTGCTGAAGCAACTAGGTCTTTTCCTGTTCTAAATGACACTACTCCTGGGCAGCTGTTCACTGCGTTGGTCATTACCAGAAACATGGAGTTTGTTGATGATATATGGACATTTGAAGAGCTTGGAGATTTCTTGAAATCCCATGGATGCCACGTGGCTATGCTTTCATCACCGGAGTTTTCATTAAAAAATGGAATTTCTGGTTGCCTGAAAGCCTTATTGCGAGAGCTTCTAGGGGATGCTATCGACTCAGCTGATATATCAATCTTGGCATCATGGTATAGAGAACAAGACAACTACAATAAACCACTAGTGCTGATCATTAATGATTTGGAAAGATGTTGCGGATCAGTCTTAACCGATTTTATCCTGATGTTAAGTGAATGGGTTGTCAAGGTGCCAATCATCTTAATATTTGGAGTTGCAACGACAGTGGACACCCCAAGAAACATTTTGCCATCATATGCTCTCGGGAATTTGTGTCCTTCTAAGTTTATGTTTCGAACGCCAGCTGAGAGAATGGATGCAATTGTTGAGGCTGTTCTTGTGAAACATTGCACTACATTTAGTATTGGTCATAAAGTGGCACTCTTCCTCAGAAACTACTTCATCAACCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTTACTAATGTAGTTTTTGGGTTACTGATTTTTTATGTGTATCATCATTTCATGAGTTACATACACAGTGACAGGATATATGCCTTTGTCTTTTACGTGTCATATTTTCTGATTATATCTTTAAGGTAG 1179 0.3961 MAPSSLSIADSQSSSTAPGVAENDLQPFFVLHKASSRRKDRTSTEQGKLRKRDELSSSPPPQSAKKLAGRTTEECDHHLFQQLQIETFEIVWAKIESTIKDVLRDLNASVFNDIQQWVLECFNATTLLGEPSIAEATRSFPVLNDTTPGQLFTALVITRNMEFVDDIWTFEELGDFLKSHGCHVAMLSSPEFSLKNGISGCLKALLRELLGDAIDSADISILASWYREQDNYNKPLVLIINDLERCCGSVLTDFILMLSEWVVKVPIILIFGVATTVDTPRNILPSYALGNLCPSKFMFRTPAERMDAIVEAVLVKHCTTFSIGHKVALFLRNYFINQDGTVTSFIRALKVTNVVFGLLIFYVYHHFMSYIHSDRIYAFVFYVSYFLIISLR. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00293 392 MobiDBLite consensus disorder prediction 1 21 - -
Seca5g00293 392 MobiDBLite consensus disorder prediction 1 70 - -
Seca5g00293 392 CDD Orc3 86 369 - -
Seca5g00293 392 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 22 351 IPR020795 GO:0003677|GO:0005664|GO:0006260
Seca5g00293 392 MobiDBLite consensus disorder prediction 33 55 - -
Seca5g00293 392 Coils Coil 388 392 - -
Seca5g00293 392 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 232 351 IPR045667 -
Seca5g00293 392 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 75 210 IPR045667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00293 Seca-Chr5 6088196 6092206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00293 1 351 Core DNA Replication Machinery Family AT5G16690 51.124 2.25e-120 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00293 K02605 - gmx:100780646 567.385