Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00292 ATGGGAAGGAGATATTCGTCCAGGGTTTCAGTAAACATTGACAAGGACTCGAGAGGGTTAAACTCACAAGCTATCACATTTCTTGATTGTTTGGTTAGAAATTTTTTGAAGCCCATTGAAGGAATGCCTTTCCATGAAATTTTCTGCTTCAAGAATGTTGAGAAGCTTCAATTGGTTTTGATTGGAGATCCAAGAAGAAGGATTCAAGTTGATCTCTTGGAGTTCCATAAGATTTTAAGGTGCACTTGCTGTAACAAGAGTGGCAATGCCCTATTGCCATCCAGACATGATTCCTCAATTATGTATTCCCTGGCTCAAGAACATGGAGATCTTATCAATCTTCATGACTGGTTCCAATCTTTTAGAACCATTGTTCTTCAACATACAAATAAACGGAAACAAAAATCAAGGCAGCCCCCGTTACCAAAGAAGAGAAAAGACACGAATGGATCTGGAGACCAAAATGAAGCATCAATTCAAGCACGCTTTTGCAAGGCAGTTACAGAGCTACAGATCACAGGGCTAGTTAGAATGCCCAGCAAGAGACGCTCGGATTTTGTACAAAGAGTTGCATTTGGACTTTGA 585 0.4017 MGRRYSSRVSVNIDKDSRGLNSQAITFLDCLVRNFLKPIEGMPFHEIFCFKNVEKLQLVLIGDPRRRIQVDLLEFHKILRCTCCNKSGNALLPSRHDSSIMYSLAQEHGDLINLHDWFQSFRTIVLQHTNKRKQKSRQPPLPKKRKDTNGSGDQNEASIQARFCKAVTELQITGLVRMPSKRRSDFVQRVAFGL. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00292 194 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 7 193 IPR020795 GO:0003677|GO:0005664|GO:0006260
Seca5g00292 194 CDD Orc3 43 192 - -
Seca5g00292 194 MobiDBLite consensus disorder prediction 129 155 - -
Seca5g00292 194 Pfam Origin recognition complex winged helix C-terminal 65 192 IPR040855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00292 Seca-Chr5 6067106 6078326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00292 3 126 Core DNA Replication Machinery Family AT5G16690 53.226 1.90e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00292 K02605 - gmx:100780646 337.035