Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00284 ATGTGGGGTTCTGTTCTTGATGATATATGTTCCAAGTGTGGGGTGGTGTCCTACTTAATTTTTGTTTTTAAAAATGTGAAGTATCATCAAACAGGAAAGAAGTATGAAAAGGCTGCTGATTTTGTTAGTGAAGATGGATCCTTCGGGAATGATGAGCAGAAGCTAGCTAAGGCATTGAGAGTGACATGCTGGTTGAATAGTGCAACTTGTAGCCTTAAACTTAATGACTTTTCTAGAGACATTAAACTATGTTCTCAGGTGCTTGATGTTGAGCTTTACAATGATAAAGCATTGTACAGACGAGCACAAACATATATAGAGATTGAAGACTATGTTTTGGCAGATGTAGACATCAAGAAAGCTCCCGAGGTGGACCCTCAAAATAGGGAGGTAATGGTAATGAAGAGGAGATTGGAGCAACTACAAGCTGACAATTGTGAAGTCTATAAATCAGTTTGA 459 0.3834 MWGSVLDDICSKCGVVSYLIFVFKNVKYHQTGKKYEKAADFVSEDGSFGNDEQKLAKALRVTCWLNSATCSLKLNDFSRDIKLCSQVLDVELYNDKALYRRAQTYIEIEDYVLADVDIKKAPEVDPQNREVMVMKRRLEQLQADNCEVYKSV. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00284 152 Gene3D Tetratricopeptide repeat domain 21 151 IPR011990 GO:0005515
Seca5g00284 152 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 23 141 IPR039663 -
Seca5g00284 152 SUPERFAMILY TPR-like 27 143 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00284 Seca-Chr5 5659063 5659521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00284 23 140 Calmodulin-binding Proteins AT3G25230 52.542 2.02e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00284 K09571 - gmx:100798382 179.489