Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00278 ATGGGAAGGAAAAAGACAGAGGATGCAGGGCCATCTGCAAAGGCTAAGGCAAGTAGCAAAGATGCTCCGAAGAAGGAAAAATTTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTCTCTTCTTCCTCCAGTAAGCCCAAGCCAAAACCTGCTCCAAAAGCTTCCACATACACTGATGGCATTGATCTCCCTCCCTCTGATGATGAAGATGATGAATATCTCTCGGAAGATGAGCAACAGCAAAATAACATGCCAAAACAGTCCAGTCAGCAGCAGAGGCCTGATTTGAAGCCACTTGATGTACCTATTGCAGACAAAGAGTTGAAAAAACGTGAAAAGAAAGAGCTTATAGCTGCCTATGTTGTTGAGCAGGCAAAGAAGGAAGCTCTTAAGGATGATCATGATGCTTTCACTGTGGTCATTGGAAGCCGGACTTCAATGCTTGATGGAGAAGATGATGCTGATGCTAATGTCAAAGATATAACAATAGAAAATTTCTCTGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCATCAGTGAGGATATCTCATGGGAAACGGTATGGTTTGGTTGGGCCCAATGGAATGGGCAAATCAACACTCTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAAAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCACTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTGTTAAAATTAGACAAGAAGTTGCTTCTCTCCAAAATGCAGCTTCTGTTGAAGGAAGTGTAGATAAAGATAATAATTCAGAGGAAGATGATGCAGGAGAGAAGCTAGCAGAGCTGTATGAAAAATTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAGGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTATTGTTGCTTGATGAACCCACAAATCATCTTGACCTAAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGTTGGAAGAAAACTCTAGTGGTTGTCTCACATGACAGGGATTTCCTCAATACTGTATGCACTGAGATTATTCATCTGCATGATTTGAAACTACATTTCTATCGCGGAAATTTTGATGATTTTGAGAGTGGTTATGAACAGCGTCGTAAAGAGATGAATAAGAAGTTTGAGATTTATGACAAGCAATTGAAAGCAGCTAGAAGGAGTGGAAGCCGTGCTCAGCAAGAAAAGGTGAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGCAGCATCTAAAGCCAAGGGTAAGGGCAAGGTTGATGAAGACGAGGCCCCACCAGAAGTACCACAGAAATGGAGGGACTACAGCGTTGAGTTCCACTTTCCTGAACCTACTGAGCTCACTCCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCTGCTACCCCAATCGGGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGCACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCGACTCTGCTAAATCTTCTGGCAGGTGATTTGGTTCCAACTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTTGACCTTTTAACAATGGATGAAACACCTGTTCAGTACCTCCTTCGTCTCCACCCTGACCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGCGGAAAACTTGGCAAGTTTGGGCTACCTAGTCATAACCATCTTACCCCTATTGCCAAACTATCAGGAGGGCAGAAGGCTCGGGTGGTCTTTACGTCGATATCAATGTCAAAACCCCACATTTTATTGTTAGATGAACCCACGAATCATCTGGATATGCAAAGTATTGATGCATTGGCTGATGCACTAGATGAATTCACTGGTGGAGTTGTTCTTGTTAGTCATGATTCTAGATTGATATCACGTGTCTGTGAGGATGAAGAAAGGAGTCAAATATGGGTTGTTGAGGATGGTACTGTGAGAACTTTCCCTGGAACATTTGAGGATTACAAGGAGGAATTGCTGAGAGAGATTAAAGCTGAAGTTGACGATTGA 2190 0.4352 MGRKKTEDAGPSAKAKASSKDAPKKEKFSVSAMLASMDEKPDKPKKVSSSSSKPKPKPAPKASTYTDGIDLPPSDDEDDEYLSEDEQQQNNMPKQSSQQQRPDLKPLDVPIADKELKKREKKELIAAYVVEQAKKEALKDDHDAFTVVIGSRTSMLDGEDDADANVKDITIENFSVSARGKELLKNASVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANVELVKIRQEVASLQNAASVEGSVDKDNNSEEDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKFEIYDKQLKAARRSGSRAQQEKVKDRAKFAAAKAASKAKGKGKVDEDEAPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFCYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRGKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVRTFPGTFEDYKEELLREIKAEVDD. 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00278 729 CDD ABCF_EF-3 502 704 - -
Seca5g00278 729 Gene3D - 166 457 IPR027417 -
Seca5g00278 729 Pfam ABC transporter 519 654 IPR003439 GO:0005524
Seca5g00278 729 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 169 430 IPR003439 GO:0005524
Seca5g00278 729 MobiDBLite consensus disorder prediction 86 103 - -
Seca5g00278 729 Coils Coil 419 439 - -
Seca5g00278 729 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 143 722 - -
Seca5g00278 729 ProSitePatterns ABC transporters family signature. 327 341 IPR017871 GO:0005524|GO:0016887
Seca5g00278 729 SMART AAA_5 193 399 IPR003593 GO:0016887
Seca5g00278 729 SMART AAA_5 528 704 IPR003593 GO:0016887
Seca5g00278 729 Pfam ABC transporter 184 355 IPR003439 GO:0005524
Seca5g00278 729 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 727 IPR003439 GO:0005524
Seca5g00278 729 CDD ABCF_EF-3 169 400 - -
Seca5g00278 729 MobiDBLite consensus disorder prediction 1 107 - -
Seca5g00278 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 417 IPR027417 -
Seca5g00278 729 Coils Coil 716 729 - -
Seca5g00278 729 MobiDBLite consensus disorder prediction 71 85 - -
Seca5g00278 729 FunFam ABC transporter F family member 4 167 451 - -
Seca5g00278 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 716 IPR027417 -
Seca5g00278 729 Gene3D - 468 728 IPR027417 -
Seca5g00278 729 Coils Coil 245 265 - -
Seca5g00278 729 MobiDBLite consensus disorder prediction 458 477 - -
Seca5g00278 729 FunFam ABC transporter F family member 4 467 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00278 Seca-Chr5 5526171 5528360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00278 502 705 Calmodulin-binding Proteins AT2G36910 26.906 1.12e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00278 K06184 - gmx:100806865 1180.24