Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00260 ATGGGGCTACATTTTGGTAGTGAACAAGAAGCTGGTGATTTTTATGAGACGTATTCTAAGAGTTATGGTTTTGCTGTAAGGAAAGATGATGTCAAGAAGGATGCTAAGGGCCAGGTTCGAATGCGCCAATTTGTTTGCAACAAGGAGGGTGTAAGGAACAAAAAACATTTGATGCGGGTTGATAGAAAAAGGGAACATAGACCATTGACCCGTACATCATGTCCTGCTAAACTTCGTGTGCACTACGATCTTAGGACAAATAAATGGAAAGTGGTCTCATTTGTGCAGAATCATAACCACGAACTATGCCCATCAAAATTTAGGCACCTGATCAGCACACATCGATTTATTCCGGATGCAGACAAAGCTCAAATTGATAGCTTGCATGCACATGGTGTAAGAACCTGCCACATAATGGGTTATTTGGTAGCTCAAAGAGGGGGATATGGTAATCTGAGTTTTATGAGAAAGGATGTGTATAATTATCTTGATAGCAAAAGTCGTATTCGGATTAAAGGTGGGGATGCTCGCGCTGCATTAAGTTATCTTCAAGGAAAATCAAATAGTGACCCTGTGCTATTTTGCAAGTACACAATTGATGAGAAAAATATATTGAAGACAATATTTTGGGCAGATGGTGCATGTGTTTCTGACTATTTATGCTTCGGTGATGTTATTGCCTTTGACACCACTTATAAGAAGAATAAATACCATCATCCTGCTTTTTTGCAGGCAATGTTCTACAAACACCCAAAATCTGTTGTGACAGATGGAGATGGAGCGATGAGAGAGGCCATTAAGCAAGTGTTTCCCAATGCATCACACAGATTGTGTGCTTGGCACTTGCAGAAAAATGCATGTGAAAATGTGAAGAGTGCTTCTTTTTTACAGGACTTCCAGACTGCTGTGTACTCCAATTTCACCCCGGAAAAATTTGAAGATTATTGGGAGAAGATGGTTTTGAAACATGGTTTGGTTGGGAACAATTGGGTTACTAAAACCTACGAAAACAAATCATTATGGGCCACAGCTTATTTTCGTGATAAGTTTTTTGGTCGAATAAGAACCACTTCTCAATGTGAGGCAATAAATTCTTATATAAAGGCATATGTAAGGAAGAGGAGCAGTTTTGTTGAATTAATGCATAATATTGATCAAACCTTGAGAGTGTTAGAACCACAGGCAACACTAGAAGGGGGGTTGAATAGTGTTTTAGACATTTTAAGACAATTTTTGGTAATCTTTAAAATAAACAATCACGTTAAGTGA 1269 0.3846 MGLHFGSEQEAGDFYETYSKSYGFAVRKDDVKKDAKGQVRMRQFVCNKEGVRNKKHLMRVDRKREHRPLTRTSCPAKLRVHYDLRTNKWKVVSFVQNHNHELCPSKFRHLISTHRFIPDADKAQIDSLHAHGVRTCHIMGYLVAQRGGYGNLSFMRKDVYNYLDSKSRIRIKGGDARAALSYLQGKSNSDPVLFCKYTIDEKNILKTIFWADGACVSDYLCFGDVIAFDTTYKKNKYHHPAFLQAMFYKHPKSVVTDGDGAMREAIKQVFPNASHRLCAWHLQKNACENVKSASFLQDFQTAVYSNFTPEKFEDYWEKMVLKHGLVGNNWVTKTYENKSLWATAYFRDKFFGRIRTTSQCEAINSYIKAYVRKRSSFVELMHNIDQTLRVLEPQATLEGGLNSVLDILRQFLVIFKINNHVK. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00260 422 Pfam FAR1 DNA-binding domain 13 103 IPR004330 -
Seca5g00260 422 Pfam MULE transposase domain 242 285 IPR018289 -
Seca5g00260 422 PANTHER OS01G0519700 PROTEIN 2 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00260 Seca-Chr5 4946585 4947955 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g00260 FAR1 4.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00260 - - ccaj:109792835 528.48