Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00242 ATGCATGTCACAATGGCTCCTTCTTCTGTCACTGTTACTGCCCGCTTTCATGAATCCGTCACCAGAAATGCACTTCGCTCCTATCTTGCTGAGTTTATCTCTACTTTCTTCTATGTCATTGTCGTCGTTGGCTCTGGAATGTCCTCAAGGAAGTTGATGCCTGATGCTTCAGTGAACCCAACAAGTTTGCTTGTGGCTGCCATTGCAAATGCTTTTGCATTGTCCTCTGTTCTGTATATAGCATGGGACATCTCTGGTGGACATGTCAATCCGGCTGTGACCTTTGCAATGGCAGTGGGAGGTCACATTAGTGTTCCAACTGCTCTCTTTTATTGGGTTGCTCAATTGATTGCCTCTGTTATGGCTTGCCTTGTTCTCAGGGTCATTGTTGTTGGAATGCATGTGCCAACATACACAATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGTTAGAGGGTATATTGACATTTGTTTTGGTGTATAGTGTGTATGCAGCAAGGGACCCAAGGCGTGGTGCATTGAGTGCCACAGGGACACTTGTGGTTGGCTTAATAGCTGGGGCTAATGTGTTGGCTTCAGGACCATTCTCTGGAGGGTCAATGAACCCTGCTTGTGCTTTTGGCTCAGCAGCAATTGCAGGCACTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATTGGTGCTGCCATTGCTGGCCTTCTTTATGACAATGTGGTGTTCCCTCTTCAACCCTCACATTCAATTTCAGAAATTGGGGTCTAA 771 0.4669 MHVTMAPSSVTVTARFHESVTRNALRSYLAEFISTFFYVIVVVGSGMSSRKLMPDASVNPTSLLVAAIANAFALSSVLYIAWDISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVMACLVLRVIVVGMHVPTYTIAEEMTGFGASVLEGILTFVLVYSVYAARDPRRGALSATGTLVVGLIAGANVLASGPFSGGSMNPACAFGSAAIAGTFRNQAVYWVGPLIGAAIAGLLYDNVVFPLQPSHSISEIGV. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00242 256 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00242 256 PRINTS Major intrinsic protein family signature 152 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00242 256 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00242 256 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00242 256 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00242 256 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00242 256 ProSitePatterns MIP family signature. 88 96 IPR022357 -
Seca5g00242 256 Gene3D Glycerol uptake facilitator protein. 9 250 IPR023271 -
Seca5g00242 256 PANTHER AQUAPORIN-8 15 244 IPR034294 -
Seca5g00242 256 Pfam Major intrinsic protein 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00242 256 FunFam Probable aquaporin TIP5-1 10 250 - -
Seca5g00242 256 SUPERFAMILY Aquaporin-like 16 248 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00242 Seca-Chr5 4789955 4792190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00242 5 252 Major Intrinsic Protein MIP AT3G47440 64.516 8.34e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00242 K09873 - gmx:100801448 440.269