Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00240 ATGTTGCGTGGTGTACCCAAAGTCCTGCATTTGTCAAAGAAATCATCAACAGCAGAGGAACTACATGTCAAGGAATTATTCTTTAAGTTATATCCATTCTTGAAGATTGCATACAAGACCATGAATCAAACCATCATTGAAGCCATGGAACAAGAAAAAGAGATTAATATCCTTGATCTCAGTGCACCTCATGATGCCACTCAATGGATTTATCTTATGCAGAGCTTAAGAGAACGTTTACCAAACCCACCACCACCATATCCGAAAATTACAATTACATGTATACATGTGAGGAAGGAGGTGTTGGATCAAATGGAGTTACATTTGAGAATAGAAGCTGAAAGATTGAATTTCCCTGATTTCCAATTCAATCCTGTTGTGAGCACTTTGGAGAACCTTGACCTTGAAACATTGCCTGTCAAGAAGGGAGAGCCACTTGCAATTAGTTGTGTGTTTCAACTTCACTCTCTTCTGGCCACTGATGAGGTAATATTCCAAATGAGGAATTATTACTCACCTGCAGCATCAATGAATCAATATGTACAAATGCTTGGTAAACAGAAGATGAAGGAGAAGATGATCAATCCAAGTCCTGACTCAGCATTGTTACCTTTTTCTCTGAGTCCACCTAAGATGGAGTGTTTGCTAAATGTCCTGTGGAAGCTCAATCCTAAAGTGATGATGATTACTGAGCAAGAAGCCAATGTTAATGGATCTACTTTGACAAAGAGGATGGACAAAGCTTTGCACTTTTATGGCTCATTATTTGATTGCTTGGAATCTTCCTTTTCAAGAACATCAGTAGACAGAACCTTATTGGAGAAGATGTTACTTGGGGAGCAAATAAAGAACATTATTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGTATGAGAAGCTTAAAACATGGATACCAAGGCTTCAATTGGCTGGATTTGGAATGGTACCTGTTAGCTCCAGTGGGATACAACAAGCAAAAAACCTGTTGCAAAGCTATGTACATGGATATCATATCCTTCAGGACAATCAATGCGTGTTTATCTGTTGGAAAGGTAAGCCTCTCTTTTCTGTATCAGCCTGGAGAAGGTGTTAG 1092 0.3919 MLRGVPKVLHLSKKSSTAEELHVKELFFKLYPFLKIAYKTMNQTIIEAMEQEKEINILDLSAPHDATQWIYLMQSLRERLPNPPPPYPKITITCIHVRKEVLDQMELHLRIEAERLNFPDFQFNPVVSTLENLDLETLPVKKGEPLAISCVFQLHSLLATDEVIFQMRNYYSPAASMNQYVQMLGKQKMKEKMINPSPDSALLPFSLSPPKMECLLNVLWKLNPKVMMITEQEANVNGSTLTKRMDKALHFYGSLFDCLESSFSRTSVDRTLLEKMLLGEQIKNIIACEGVERKERYEKLKTWIPRLQLAGFGMVPVSSSGIQQAKNLLQSYVHGYHILQDNQCVFICWKGKPLFSVSAWRRC. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00240 363 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 357 IPR005202 -
Seca5g00240 363 Pfam GRAS domain family 13 361 IPR005202 -
Seca5g00240 363 ProSiteProfiles GRAS family profile. 1 361 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00240 Seca-Chr5 4697391 4698482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00240 4 361 GRAS Transcription Factor Family AT1G50420 44.920 2.84e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca5g00240 GRAS 4.7e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00240 - - vra:106778126 410.609