Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00235 ATGGCTGCCCCCCAAGATCAACAAAATCTTGCAACAGTAGATGTCCATGCTGCCAAAGATCTGCTCAATTCATCTGGTTATCGTTATCTCGATGTGAGGTCAGTTGAGGAATTCAACAAAAGCCATGTTGAGAATGCTCATAATGTCCCCTATATGTTCATCACAGAAGCAGGACGGGTGAAAAATCCTGATTTTGTTAGCCAGGTTGCAGCAATATGCAAAAGTGAGGATCATTTAATTGTGGCTTGCAATAGTGGAGGAAGATCAAGCCGAGCCTGCGTTGATCTAATTGTTTCACAGGGATATAAGAATGTTGTTAACATGGGAGGAGGCTACTCTGCGTGGGTGGACGCTGGATTTGCTGGGAACAAGCCAGCAGAAGAGCTCAACACAAGTTGCAAGTTTCGTCCTTAA 414 0.4444 MAAPQDQQNLATVDVHAAKDLLNSSGYRYLDVRSVEEFNKSHVENAHNVPYMFITEAGRVKNPDFVSQVAAICKSEDHLIVACNSGGRSSRACVDLIVSQGYKNVVNMGGGYSAWVDAGFAGNKPAEELNTSCKFRP. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00235 137 Pfam Rhodanese-like domain 17 117 IPR001763 -
Seca5g00235 137 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 9 120 IPR036873 -
Seca5g00235 137 ProSiteProfiles Rhodanese domain profile. 23 124 IPR001763 -
Seca5g00235 137 PANTHER THIOSULFATE SULFURTRANSFERASE 18 3 126 IPR044684 GO:0003824
Seca5g00235 137 SMART rhod_4 13 121 IPR001763 -
Seca5g00235 137 Gene3D - 2 121 IPR036873 -
Seca5g00235 137 CDD RHOD 18 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00235 Seca-Chr5 4569340 4570864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00235 8 128 Sulfurtransferasese or Rhodanese AT5G66170 47.154 6.92e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00235 K22547 - gmx:100794624 244.588