Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00234 ATGGCCAAGAAGAAGAGCTGGTTTAATCTTGTGAAGAGGCTTTTTTTATGGGACACACATTCCAAACAAGAGAAGAAGGAGAAAAGAAGGAAATGGGTATTTGGAAGGCTAAAGAGCAAGAGATTACCTTCAATAACAGCATCACTACCATCAAAGGAAACAACACTGAGTGAAGCAGAGGAGGAACAGAGCAAGCATGCTTTAACAGTGGCCATTGCCTCAGCTGCAGCTGCTGAAGCTGCTGTTACTGCTGCTCAGGTTGCAGCTCAGGTTGTTAGGCTCACTGGGGTCTCAAAATCTTCCAATCAACTTCATGAAGAATCTCAAGGAGTTAAAACTAGGAAATGTACTACTCCTCAGTTCCACCAGAGAGAGATTGAAGAATCTGCAGCCATCAAAATTCAAACTGCATTTCGGGGTTACCTAGCAAAGAAGGCTTTGAGGGCATTGAAAGGAATAGTGAAGCTTCAAGCTATCATTCGTGGTAGAGCAGTTAGACGCCAAGCTATGAGTACTCTAAAGTGCTTACAGTCCATTGTAAGTATCCAATCACAGGTCTGTGCAAGGAGACTCAAAATGGTTGAAGGAAGATGGGATGGTGCTGAAAATGAAGACATGCAAGATTCTAAAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGAAAGTGGGATGACAGCACTCTTTTGAAGGAAGAGGTAGATGCTTCTTGCACAAGCAAGAAAGAAGCAATTCTTAAGAGAGAAAGAGTAAAAGAATACTCATTTAACCATAGAAGATCAGCAGAGTCAGAAAGAAGTAAAGTAAATGGAAGATGGAGGTATTGGCTGGAGCAGTGGGTAGATACACAACTTTCTAAAAGTAAGGAACTTGAAGATTTAGACACAGTTTTCAGCTCACATTCTAGAGGTGGAGAGGAATATGGAGGAAGGCAACTTAGGATGAGAATTACTCAGAGACAAAGTCCAGTTGAAGGGTTAGATTCTCCAATAAGGAAATCTTTTCCTCATCATAGGAGGCAGTGTTCAGTGGGAGAAGACCACTCACACTCATTTTCAAGCTCTCCTGCAACTCCAGCTTACATGGCTGCAACAGAATCAGCAAAAGCAAAAGTAAGATCAAGTTCCCCCAAAGCAAGGACTGGAAATTTGGACATCAACTCTGATAGCTATTCACCATGCAAGAAAAAGCTATCAATTGTATCTTCTGTTAACAGTGAAGTGCTTGTTAATGGTAGGAATATGGGCAAGCTTAGTTGTAACCAGCAAAGATCTCCAAGCTTTAAGGGCCTTACAGTGCCTATAAAATCAAGCAGGACTACCATAAAGGATCTCAGCATTAATTCAGACTCCTCACTGCCTACTTGGGATAGGCAAAGTTCCTTCAAATGA 1392 0.4159 MAKKKSWFNLVKRLFLWDTHSKQEKKEKRRKWVFGRLKSKRLPSITASLPSKETTLSEAEEEQSKHALTVAIASAAAAEAAVTAAQVAAQVVRLTGVSKSSNQLHEESQGVKTRKCTTPQFHQREIEESAAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSQVCARRLKMVEGRWDGAENEDMQDSKDKIIRMDSNSERKWDDSTLLKEEVDASCTSKKEAILKRERVKEYSFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDTVFSSHSRGGEEYGGRQLRMRITQRQSPVEGLDSPIRKSFPHHRRQCSVGEDHSHSFSSSPATPAYMAATESAKAKVRSSSPKARTGNLDINSDSYSPCKKKLSIVSSVNSEVLVNGRNMGKLSCNQQRSPSFKGLTVPIKSSRTTIKDLSINSDSSLPTWDRQSSFK. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00234 463 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Seca5g00234 463 ProSiteProfiles IQ motif profile. 151 178 IPR000048 GO:0005515
Seca5g00234 463 Gene3D - 127 177 - -
Seca5g00234 463 Pfam IQ calmodulin-binding motif 129 148 IPR000048 GO:0005515
Seca5g00234 463 PANTHER IQ-DOMAIN 5-RELATED 1 399 - -
Seca5g00234 463 MobiDBLite consensus disorder prediction 369 384 - -
Seca5g00234 463 SMART iq_5 126 148 IPR000048 GO:0005515
Seca5g00234 463 MobiDBLite consensus disorder prediction 364 384 - -
Seca5g00234 463 FunFam IQ-domain 11 126 177 - -
Seca5g00234 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 169 IPR027417 -
Seca5g00234 463 Pfam Protein of unknown function (DUF4005) 350 424 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00234 Seca-Chr5 4556894 4560408 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00234 1 463 IQD Protein Family AT5G13460 47.251 4.41e-119 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00234 - - gmx:100800192 694.886