Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00231 ATGTCGCGGAAGGGTTTGATGGAACAAGACCTGAGTAAGTTGGATGTGACCAAGTTGCATCCACTTTCTCCTGAAGTCATATCTAGGCAGGCTACTATTAATATTGGCACCATTGGCCATGTGGCACATGGAAAGTCAACAGTTGTGAAAGCCATATCAGGTGTTCAGACTGTGCGGTTTAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGAAAGGAAGACAGTCCTATGTGTGATGTACCAGGGTTTGAAAACTGCAAGATGAAATTACTAAGACACGTTTCTTTTGTGGATTGCCCGGGACATGATATTCTCATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTGCTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAGACCTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAGCACATTATAATCCTTCAGAACAAGGTAGACCTGATTCAAGAGAATGTGGCTACCAATCAGCATGAAGCTATTCAGAAGTTTATTCAAGGAACTGTTGCTGATGGTGCACCGGTAGTACCTATTTCAGCACAATTGAAGTACAATATTGATGTTGTATGTGAGTATATTGTGAAGAAGATCCCAATCCCTGAAAGGAACTTCATTTCTCCACCTAATATGATAGTGATTCGGTCATTTGATGTCAATAAACCTGGTTTTGAGGTGGATGATATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTCAACCAATTCATTGAAGTTCGACCTGGAATTGTTGTTAAAGACGAAAGTGGAAACATACGATGCACACCCATATATTCCAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTGCCTGGAGGTCTAATTGGTGTTGGGACAACAATGGATCCCACTTTGACACGTGCTGACAGGTTGGTAGGGCAAGTTTTAGGAGAGGTTGGATCACTGCCTGAGGTTTTTGTTGAACTTGAGGTAAATTTTTTCTTGCTTAGACGGCTTCTTGGTGTCCGGACAAAGGGCTCTGAGAGACAGGGAAAGGTCTCTAAGCTGGCCAAAGGAGAGATGCTAATGTTGAACATAGGATCAATGTCAACAGGGGCCAGAGTTATTGCTGTGAAGAATGACTTGGCGAAGTTGCAACTTACTTCCCCTGTGTGCACTAGCAAAGGTGAGAAGATTGCACTCAGTCGACGTGTTGAGAAGCATTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAATCACTCTTGATGTTCCTACTGCCCCCATTTTGAGTTGA 1401 0.4311 MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPMCDVPGFENCKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVATNQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFISPPNMIVIRSFDVNKPGFEVDDIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPTAPILS. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00231 466 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Seca5g00231 466 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Seca5g00231 466 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Seca5g00231 466 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Seca5g00231 466 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Seca5g00231 466 Gene3D Translation factors 243 356 - -
Seca5g00231 466 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Seca5g00231 466 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Seca5g00231 466 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Seca5g00231 466 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 459 - -
Seca5g00231 466 Gene3D Translation factors 357 455 - -
Seca5g00231 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Seca5g00231 466 FunFam Eukaryotic translation initiation factor 2 subunit gamma 357 456 - -
Seca5g00231 466 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Seca5g00231 466 CDD eIF2_gamma_III 357 451 IPR015256 -
Seca5g00231 466 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Seca5g00231 466 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Seca5g00231 466 FunFam Eukaryotic translation initiation factor 2 subunit gamma 30 240 - -
Seca5g00231 466 SUPERFAMILY Translation proteins 240 354 IPR009000 -
Seca5g00231 466 Gene3D - 30 240 IPR027417 -
Seca5g00231 466 FunFam Eukaryotic translation initiation factor 2 subunit gamma 241 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00231 Seca-Chr5 4501920 4506992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00231 1 464 Eukaryotic Initiation Factors Gene Family AT1G04170 90.108 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00231 K03242 - gmx:100805852 904.049