Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00215 ATGGTTGACATGTTAGGTTCATTCATCTCTGCCTTCTTGCAAGTGTTGTTAGATAGGATAGCTTGTCGTGAGCTTCTAGACTTCTTCAGGGGCAACCATCTTGATGAGGCCCTTCTGCAGAAGTTGAAGATGCTTTTGCTATCTGTCACTACAGTGCTTAGTGATGCTGAGGAGAAACAGTTTACTGATCCATTGGTCAAAGAATGGGTTGATAGGCTAAAAAATGCTGCCTATGATGCTGATGATGTCTTGGATGAGATTGCCACCAAAGCCATGCAAGACAAGATGGATTCTGGGTTTCACACAACCTTAGATCAGGTAAGAGATTATGCTGCTTCTCTCAATCCATTTGCTGAACGAGTTAAATCAAAAGTTGATAGGATAGTTGTGAGGTTGAAGTCTATAATAGAGCATAAAGACCTTCTTGGTCTTAAGGAAAGTGGTGTAGTTAAATCACTCACTGTAACTTCACCCACAACTTCTTTGGTGGATGAACATAGTGTCTATGGCAGAAATGGTGATAAGGAGAAGATTATTGATTTTATGTTGTCACCATCAGGCAACTCCAATGGAGAGGGGGTGCCTGTGGCTGTGGTTGCTATTGTTGGGATGGGAGGGGTAGGTAAGACTACCCTTGCTCAGATTTTGTATAATGACGACCGGGTGAGGAACCATTTTCAATCAAGATCATGGACCTCTGTTTCTGAGACTTTGAACGTGTATGAAATAACCAAAAAGGTTTTTGAGTCATTCACTCTGTGGTATTCTAATATCTCAGACTTGAATGTTCTCCAAATCAAGCTCAAGGATAGGTTAGCAAGACAAAGGTTTCTACTTGTATTAGATGGGTATTGGAATGAGAATTTTCTTGACTGGGACATCCTCCAAAGACCCTTTCTATCAGGAAATTGTGGAAGTAGAATCATTGTCACCACTCGCAGTCAAAGTGTTGCAACAGAAATTCGTGCTGATTTAACTCATTCCCTTTCGCTTCTATCACATGAAGATACCTGGAAGTTGTTCTCAACTCATGCATTCAAATCAGGAAACTCTGATGAACATCCTGTCTTGGCAGAAATTGGCCAGAAAATAGTAAAGAAGTGCAATGGTCTCCCCTTAGCTGCAAAATCACTAGGGAGTCTCCTACGTTCAAAAGAGGATGCTGAGGAGTGGGAAAGCATATGCAATAGTAGGATATGGGAGTTACCAAGTGATAAAAGCAGCATCCTTCCTGCTTTAAGATTGAGCTACAGTCATTTACCTTCTCATTTAAAGCAATGCTTTACTTATTGTTCCATATTTCCTAAAGGCTATGAAATAAAGAAGTGGAACTTGATCTATTTATGGATGGCTGAAGGTATCCTGCCACAGCCAAAAACAGAGAAGAGAATGGAAGATGTAGGAGAAGAATGCTTTCAAGAGTTACTATCTAGATCATTCTTTTATCAGTCAACTCACAACATGTCATGTTATGTGATGCATGACCTTATCAATGACCTAGCACAGTGTGTTGCAGGTGAATTCTGTTACAAGCTAGATGACAATAATCCAAGCAAAATCACCATGAGTGTTCGTCATTTATCGTATTTACAAGACATGTATCATGGACCTGAGAAGTTTGAGATCCTTTCTGAATTCCAGCAACTTAGGACCTTCCTACCATTCAGATTCTCAGTCTTTGGTTACTCCCCTTCAATTCCTAGTATGGTTATGGTTCAATTACCAAAACTGAAACGCCTGCGTGTGCTCTCTTTGTCTCATTATCCAATTACCAAGTTGCCGGATTCAGTTGGAAACTTAATGTATCTGCGGTATTTGAATCTTGCTCACACTGGAATTGAGTGCCTGCCTGATTCTGTCAGCACTTTGTACAACTTGGAGACATTGTTGTTGTCAGATTGTCGTCGCCTCACAATGTTACCAACAAACATGTCCAACCTTGTCAACTTGCGCCACCTTGATATTATTGGTAGCAGTGTGACAGAAATGCCTGCAAAATTTGGTAGACTGAAATCTCTCCAAGTGTTGACTAGTTTTGTTGTTAGCAGTGATGGGGGAGCAAAAGTTAGTGAGTTGGGGGAGCTTTCAGAACTTCATGGAGCACTTTTGATTGTGAACCTGCAGAATGTAGTTGATGCAACAGAAGCCTCCAATGCCAGGTTGAGGAGTAAGAAATATCTTCATGAGCTAGAATTCAAGTGGACAACTACAACTCACAATGTGCAGAGTGAAACTAAAGTACTCAGCGTGCTAGAGCCACATCAAAATGTGAAAAGACTTAAAATTCAAAATTTTGGTGGTGAAAAATTGCCAAATTGGTTGGGGAGCACTTCATTCTCTAGTATGGTGTTTCTACATCTTGCTGACTGTGGAAGTTGCCTGTCATTGCCATCACTTGGACAATTGGCCTCCCTCAGAGAACTCTATATAACAAAGATGACAAGCCTACAAGAGGTGGGTCCAGAATTCTATGGGAATGTAATTGAGTCATTCAGATCCTTGAAGATCATGAAGTTTGAGGACATACCCAATTGGGAAAAATGGTCAAGCAGAGAACTTGAACAAAGTGGGGGATTCCCTTCACTCCAAGAGCTTTACATACAGAGATGTCCTAAACTGACCATAAGGTTACCTGACCAACTTCCTTCCTTGGATAAATTAGTGATCACTGCATGTCAGGCTCTCACAGATTCAGTGACATGGGTTCCAAGATTGAGAGAATTAGAGCTAACTGGTTGTGATGCATTGGTGTCATTATCTGACCAAATGATGCAGGGAAATAAATGTCTTCAAATCATGGCCATAAACAATTGCTCATCTCTGGTCACCATATCTAGGGATGGCCTTCCAAGTACACTAAGATCTCTTGAAATCTATGAGTGCAGGAATTTACAGCTATTCCATCCTCACAGATTGATGCAGGACACTTACTATTATCCTGCCCTTGAGAGATTGCACTTAAAAAGTTGCTGTGATTCTCTTATCTCCTTTCCATTATCCCTCTTTGCCAAGCTTCAAGATCTCCGTGTACAAGACTGTAGCAATCTCCAGTTGATTTCATCTGATCCAAACAGTCTCCCATATCTTAGAAAATTGAAACTGAAGGAATGCTCCAAACTGGCTTGGTTTCCTGAAGGAGGGTTGCCTGCTCCCAAACTTGAGTCACTTTCTATCACCAAATGTGATGATCTCTCACCTGAGACTGCATGGGGTCTTCAGGCAATGACATTACTGACTTCTCTTCATATCAGTGGACTTCCTAGTCTCACTTCACTGGAACACACAGGAATTCAGCACCTAACCTCTCTCAAAATTCTGAAGATTAAAGCTTGTGATAACCTTGCATCTCTACCTTTAGAGAGATTAGTTACTTCCCTTTCTCATCTTACCATCAGAGCATGCCCATTGTTAAAAGTGCTGTGTGCAAGGGACACAGGGGAATACTGGAGTATGGTTTCTCTTATACCCTCCAGAGTCATTGAAGACTAA 3489 0.4116 MVDMLGSFISAFLQVLLDRIACRELLDFFRGNHLDEALLQKLKMLLLSVTTVLSDAEEKQFTDPLVKEWVDRLKNAAYDADDVLDEIATKAMQDKMDSGFHTTLDQVRDYAASLNPFAERVKSKVDRIVVRLKSIIEHKDLLGLKESGVVKSLTVTSPTTSLVDEHSVYGRNGDKEKIIDFMLSPSGNSNGEGVPVAVVAIVGMGGVGKTTLAQILYNDDRVRNHFQSRSWTSVSETLNVYEITKKVFESFTLWYSNISDLNVLQIKLKDRLARQRFLLVLDGYWNENFLDWDILQRPFLSGNCGSRIIVTTRSQSVATEIRADLTHSLSLLSHEDTWKLFSTHAFKSGNSDEHPVLAEIGQKIVKKCNGLPLAAKSLGSLLRSKEDAEEWESICNSRIWELPSDKSSILPALRLSYSHLPSHLKQCFTYCSIFPKGYEIKKWNLIYLWMAEGILPQPKTEKRMEDVGEECFQELLSRSFFYQSTHNMSCYVMHDLINDLAQCVAGEFCYKLDDNNPSKITMSVRHLSYLQDMYHGPEKFEILSEFQQLRTFLPFRFSVFGYSPSIPSMVMVQLPKLKRLRVLSLSHYPITKLPDSVGNLMYLRYLNLAHTGIECLPDSVSTLYNLETLLLSDCRRLTMLPTNMSNLVNLRHLDIIGSSVTEMPAKFGRLKSLQVLTSFVVSSDGGAKVSELGELSELHGALLIVNLQNVVDATEASNARLRSKKYLHELEFKWTTTTHNVQSETKVLSVLEPHQNVKRLKIQNFGGEKLPNWLGSTSFSSMVFLHLADCGSCLSLPSLGQLASLRELYITKMTSLQEVGPEFYGNVIESFRSLKIMKFEDIPNWEKWSSRELEQSGGFPSLQELYIQRCPKLTIRLPDQLPSLDKLVITACQALTDSVTWVPRLRELELTGCDALVSLSDQMMQGNKCLQIMAINNCSSLVTISRDGLPSTLRSLEIYECRNLQLFHPHRLMQDTYYYPALERLHLKSCCDSLISFPLSLFAKLQDLRVQDCSNLQLISSDPNSLPYLRKLKLKECSKLAWFPEGGLPAPKLESLSITKCDDLSPETAWGLQAMTLLTSLHISGLPSLTSLEHTGIQHLTSLKILKIKACDNLASLPLERLVTSLSHLTIRACPLLKVLCARDTGEYWSMVSLIPSRVIED. 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00215 1162 Coils Coil 704 724 - -
Seca5g00215 1162 Pfam Rx N-terminal domain 8 96 IPR041118 -
Seca5g00215 1162 SUPERFAMILY L domain-like 482 967 - -
Seca5g00215 1162 Gene3D - 151 326 IPR027417 -
Seca5g00215 1162 Gene3D Ribonuclease Inhibitor 709 897 IPR032675 -
Seca5g00215 1162 Gene3D Ribonuclease Inhibitor 562 708 IPR032675 -
Seca5g00215 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 431 IPR027417 -
Seca5g00215 1162 PANTHER DISEASE RESISTANCE PROTEIN RP 39 881 IPR044974 GO:0006952
Seca5g00215 1162 FunFam Probable disease resistance protein At1g63360 417 503 - -
Seca5g00215 1162 SUPERFAMILY RNI-like 903 1139 - -
Seca5g00215 1162 PRINTS Disease resistance protein signature 368 382 - -
Seca5g00215 1162 PRINTS Disease resistance protein signature 198 213 - -
Seca5g00215 1162 PRINTS Disease resistance protein signature 271 285 - -
Seca5g00215 1162 PRINTS Disease resistance protein signature 621 637 - -
Seca5g00215 1162 Gene3D - 422 502 IPR036388 -
Seca5g00215 1162 FunFam Probable disease resistance protein At1g61300 159 326 - -
Seca5g00215 1162 Gene3D Ribonuclease Inhibitor 903 1156 IPR032675 -
Seca5g00215 1162 Pfam NB-ARC domain 195 417 IPR002182 GO:0043531
Seca5g00215 1162 Gene3D - 331 421 IPR042197 -
Seca5g00215 1162 Gene3D - 34 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00215 Seca-Chr5 4001743 4005231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00215 190 895 WRKY Transcription Factor Family AT5G45050 22.920 3.34e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00215 - - cam:101492735 1772.29