Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00206 ATGGGTTACCTCTACCTTTCTTGCAAAGCTGAATCCGCAGTCTCAACTTCCAATTCTGTATCTTGTTCGAAAGAGAAAGGCATCAAGATCCAAGAGTTTCAGTACAGTGACCTTGAAGCTGCCACCAATGGCTTCTCAGACCGCAAGCTTCTCGGCAAAGGAAGCCATGGCTATGTCTACAAAGCCGTTGTTCATGGCCGTCCTGTTGCTGTGAAGAGACCTTCAAGACCTCACTCTCTTCTTCCTCGACCCATCTCTTCTTCTTCACCCGCTGAGATCACCAACGAGGTTGACAACGAGATCGACATCTTGTCCAAAATTCAGAGCCCCAGGTTGGTCAATTTGGTGGGTTTCACAAATGATTCAAAAGATAGGCTTTTGGTTGTTGAGTTCATGAGCAATGGTACCCTTTTTGATGTCCTTCATTCCTCTTCTAGACCCCCCAATTGGGGTAGGAGAATTCGTTTAGCTTTCCAAACTGCTAAGGCCATTGATACCCTTCATTCCTCAACCCCACCTGTTATTCATAGGGATATCAAGTCTGCAAATGTTCTCATTGACCGTAACTTCAATGCCAGGTTAGGTGATTTTGGTTTGGCCCTCATGGGTCATGTTGATGATTATAGACTCAGGTCTACTCCACCTGCTGGTACCATGGGGTATCTTGATCCTTGTTATGTCACTCCTGATAATTTGAGCACAAAGACTGATGTCTTTAGTTTTGGGATTTTGTTGTTGGAGATTATCAGTGGAAGGAAGGCTATTGATGTCACATACTCACCACCATCTATTGTGGATTGGGCTATTCCTCTTATCAAGAAAGGGAAGCTTCTGGCTGTTTATGATCCTAGAATTCAACCTCCTAAGGATCCTCTTGTGAGGAAACAGCTGGCAGTCATTGCAGCTAAATGTGTTAGGTCTTGTAGGGAGAGAAGGCCTTCCATGAAGGAGATTGTTACTTGGCTTTCTGGGTTGTGTAAATTGGTGCCTCTTCATTCATGGAATGGCTTTAATAACCCTTGCATGATGGTGGAGACTGTGGGACGCCCTGTTGAAGCAAGGAATGCACAATTCAGTTCAAGACTGAAAGAAGAAGGAAAGGTGGGTGCTTTGGATGCTTTGGATGCCAGGTTGTCTAAGTCTGCTGCATTGAGATATTCAAGGAGAGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGACCTTATGGCTACCACTGAGGAGCCTGAGTTTCTAAGAGATGATGCTGATGGAGTGGAACATAATTCTAATTCTAAATCAGTTGAACAAGTTTCTAGCTCAAGATTTGGCAGTGGAAGATATTTCATAAGAGGAAGAAAAAATCTATACAGGCCTTGTGGTACTGATAAGGATGCATTTGGTGGTTTGAGTAAAGGCCAGATTGTTGGTGAGACTTCAAAACAGGTTGGTATTTGGATTGAAGGGCACATTACTGATGTCCCCTTAACTCTGTTCAAAGAACTTTGCCAAAGGTTTTTGTTTCCCCTTTTTTCTTCCCCTCAATAA 1530 0.4366 MGYLYLSCKAESAVSTSNSVSCSKEKGIKIQEFQYSDLEAATNGFSDRKLLGKGSHGYVYKAVVHGRPVAVKRPSRPHSLLPRPISSSSPAEITNEVDNEIDILSKIQSPRLVNLVGFTNDSKDRLLVVEFMSNGTLFDVLHSSSRPPNWGRRIRLAFQTAKAIDTLHSSTPPVIHRDIKSANVLIDRNFNARLGDFGLALMGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDVTYSPPSIVDWAIPLIKKGKLLAVYDPRIQPPKDPLVRKQLAVIAAKCVRSCRERRPSMKEIVTWLSGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNAQFSSRLKEEGKVGALDALDARLSKSAALRYSRRVYSDLGFSSNLMDLMATTEEPEFLRDDADGVEHNSNSKSVEQVSSSRFGSGRYFIRGRKNLYRPCGTDKDAFGGLSKGQIVGETSKQVGIWIEGHITDVPLTLFKELCQRFLFPLFSSPQ. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00206 509 Pfam Protein kinase domain 46 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00206 509 SMART serkin_6 45 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00206 509 SUPERFAMILY Protein kinase-like (PK-like) 20 322 IPR011009 -
Seca5g00206 509 Gene3D Transferase(Phosphotransferase) domain 1 132 330 - -
Seca5g00206 509 PANTHER OS01G0253100 PROTEIN 21 325 - -
Seca5g00206 509 FunFam Serine/threonine-protein kinase-like protein At1g28390 15 131 - -
Seca5g00206 509 ProSitePatterns Protein kinases ATP-binding region signature. 51 72 IPR017441 GO:0005524
Seca5g00206 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Seca5g00206 509 Gene3D Phosphorylase Kinase; domain 1 16 131 - -
Seca5g00206 509 FunFam Serine/threonine-protein kinase-like protein 132 335 - -
Seca5g00206 509 ProSiteProfiles Protein kinase domain profile. 45 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00206 Seca-Chr5 3873156 3874881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00206 33 322 Receptor kinase-like Gene Family AT3G59420 44.932 4.24e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca5g00206 Pkinase 1.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00206 - - vum:124832395 783.482