Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00201 ATGGCTGCAACTCCTACCAAGTCTTTCCAGTCTCCCTCAAAACCCTACCTCCGATCGCAATCCAATGTCAAATCCACACCCGCTGTAACTCCCGTCACACCACAATCCCTACCTCTTCGCAGATCCACGCGCTCAAAGTCCCTCCACTTCTATTCTCCCAAACCTCCCCATGAATCTTGCGAAAATCAACACGAAACTCCGAAAAGCAGGAGAGCCAGGGAGAATCTTGATCAACCTGGGTCTCATCGATCCATTGATTTCACGAAGGATTCTGGCAAAGATAAAGTCATAACCCGCACAAGTGCAACTAGAGGAAATGTAAATGCTTCTGTTGAAGAATCAAAGAAGAGAAATGGGAAGGGGTCTGTTGAAGTTTCCTTTGCTCCAGCATCGCCCGATCAATCGGAAACTAAGAAGAGGAAGAGGGAGGGTGAGAGAATGGTTGTTACTAGAGCTTTGGCTGCGAGAAAAGGGAAATCGGAGAATAGGCAAAAGAATGTGGAGTTGCCAAAGTGCTGTACTTATTATAAAAAAGTGGTTTATGATGGGGGCGAGTTTGAAGTGGGGGATGCTGTTTATGTTAAGAGGAGAGAAGATGCTACTTCTGATGATGAAGATCCTGAAGTGGAGGAGTGTAGGTTGTGTTTTTGTTCTGGCAATGAGATCATGATTGAGTGTGACGATTGTTTAGGTGGGTTTCATTTGAAATGCTTGAAGCCGCCGTTGAAGGACGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGTAAGATGGGTAGGGAAGTTAATTTTCCAAAGCCTCCACAGGGTAAGAAACTAGTTAGGACAATGAGGCAGAAGCTTTTATCAAGTGATTTGTGGGCTGCTCATATTGAGAGTATATGGAAAGAAGTAGATGGCAACTACTGGTGTCGAGTAAGGTGGTATACAATCCCAGAAGAGACTTCTGTTGGGCGACAACCACATAACCTGAGCAGGGAGCTATATCGAACCAATGATTTTGCAGACATTGAGATGGAATCTGTCCTTAGACACTGCTATGTCATGACCCCCAAAGAATATGCTAAAGCAAAAGATGAGGGAGATGATATATTCTTCTGCGAGTATGAATATGACATCCACTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGAGACAGACAGTGATGAAGACTGGAATGTTGACAAGGAATCAGACTCTGATACTGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAATGCACAATCTCAACCATCAACAAGCCATCAGTTAGCTGCAAATCTGCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACAAAAAAAATTCCACAGCATATAAGGTCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCATCACTGCCTAAATCTTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTTATTAAAGGTGCTATTTCCGACGATCAATGTTTGGGACGTTGCCTATACATTCATGGTGTTCCCGGAACTGGCAAGACAATGAGTGTATTAACAGTAATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATTTATAGGGTCATATATGAGGCATTAAATGGACACAGGGTCAGCTGGAAAAAGGCTCTCCACCTGCTAAATGAGAGGTTTGTAGAAGGGAAGAAAACTGGAGAAGAGGCTGACAGGCCATGTATTTTGCTAATTGATGAACTTGATCTTCTTGTGACCAGAAACCAGTCGGTTTTGTACAATATTCTTGATTGGCCTACTAAGCCACATTCCAAGCTAATTGTGATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTAGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGCCGCCTCAAGGGAATTGACGTATTTGAAAAGCAAGCTATAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGTCGTGCTCTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGGAGCTAACTTCAAATACTAATTTTGTTGCTGCAGCTTCTCTTTTATGCATGAATTCCTTCTGA 2232 0.4256 MAATPTKSFQSPSKPYLRSQSNVKSTPAVTPVTPQSLPLRRSTRSKSLHFYSPKPPHESCENQHETPKSRRARENLDQPGSHRSIDFTKDSGKDKVITRTSATRGNVNASVEESKKRNGKGSVEVSFAPASPDQSETKKRKREGERMVVTRALAARKGKSENRQKNVELPKCCTYYKKVVYDGGEFEVGDAVYVKRREDATSDDEDPEVEECRLCFCSGNEIMIECDDCLGGFHLKCLKPPLKDVPEGDWICGFCEARKMGREVNFPKPPQGKKLVRTMRQKLLSSDLWAAHIESIWKEVDGNYWCRVRWYTIPEETSVGRQPHNLSRELYRTNDFADIEMESVLRHCYVMTPKEYAKAKDEGDDIFFCEYEYDIHWHSFKRLADIDNERENGEETDSDEDWNVDKESDSDTDEDVEYEEENIKNAQSQPSTSHQLAANLHKGRFFGLQKIGTKKIPQHIRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLTVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFSPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRMKELTSNTNFVAAASLLCMNSF. 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00201 743 SUPERFAMILY FYVE/PHD zinc finger 200 261 IPR011011 -
Seca5g00201 743 FunFam Origin recognition complex subunit 1 207 274 - -
Seca5g00201 743 SMART PHD_3 214 256 IPR001965 -
Seca5g00201 743 MobiDBLite consensus disorder prediction 1 49 - -
Seca5g00201 743 Pfam BAH domain 292 381 IPR001025 GO:0003682
Seca5g00201 743 Gene3D - 661 735 - -
Seca5g00201 743 Gene3D - 155 401 IPR043151 -
Seca5g00201 743 MobiDBLite consensus disorder prediction 390 432 - -
Seca5g00201 743 Pfam ATPase family associated with various cellular activities (AAA) 513 658 IPR003959 GO:0005524|GO:0016887
Seca5g00201 743 ProSiteProfiles Zinc finger PHD-type profile. 209 258 IPR019787 -
Seca5g00201 743 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 316 727 - -
Seca5g00201 743 Pfam AAA lid domain 686 719 IPR041083 -
Seca5g00201 743 MobiDBLite consensus disorder prediction 1 146 - -
Seca5g00201 743 ProSiteProfiles BAH domain profile. 268 384 IPR001025 GO:0003682
Seca5g00201 743 SMART BAH_4 243 384 IPR001025 GO:0003682
Seca5g00201 743 MobiDBLite consensus disorder prediction 58 97 - -
Seca5g00201 743 FunFam Origin recognition complex subunit 1 661 743 - -
Seca5g00201 743 Pfam PHD-finger 215 257 IPR019787 -
Seca5g00201 743 SMART AAA_5 508 662 IPR003593 GO:0016887
Seca5g00201 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 721 IPR027417 -
Seca5g00201 743 ProSitePatterns Zinc finger PHD-type signature. 212 255 IPR019786 -
Seca5g00201 743 MobiDBLite consensus disorder prediction 390 420 - -
Seca5g00201 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 271 IPR013083 -
Seca5g00201 743 FunFam Origin recognition complex subunit 1 465 664 - -
Seca5g00201 743 Gene3D - 464 660 IPR027417 -
Seca5g00201 743 FunFam Origin recognition complex subunit 1 275 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00201 Seca-Chr5 3787602 3796194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00201 4 740 Core DNA Replication Machinery Family AT4G14700 59.626 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca5g00201 AAA 1.4e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00201 K02603 - gmx:100798547 1204.5