Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00194 ATGGGTAGGGGGAAGATTGAGATCAAAAGGATTGAGAATGCTAACAGCAGACAAGTTACATTCTCCAAGAGGAGAACTGGGTTGCTCAAAAAGGCTCAAGAGCTGGCCATTCTCTGCGATGCTGAGGTTGCTGTTATCATCTTCTCCAACACAGGGAAGCTGTTCGAGTTTTCGAGTTCTGGTATGAAGCGAACACTTCAAAGATACAACAAATGCATGGATTCTTCAGAGGTAGCAGTAGCAGAACATAAAACAGAGAAGGAAGATTCTAAGATGGTGGAGATTCTTAAAGATGAAATTGCAAACCTAGAAACAAAGCAATTACAGCTGTTGGGTAAAGACCTAACAGGATTGGGCTTAAAGGAACTGCAACATCTAGAGCAGCAACTTAATGAAGGGTTATTGTCTGTCAAGGAGAGGAAGGAGGAATTACTTATGGAACAACTGGAGCAGTCAAGAGTACAGGAGCAGAGGGCTATGCTGGAGAATGAAACTTTGCGGAGACAGGCAAATTATAATCTTAATATAATTCTGATTTTCCATTATTTCTATCATTGA 558 0.4104 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLQRYNKCMDSSEVAVAEHKTEKEDSKMVEILKDEIANLETKQLQLLGKDLTGLGLKELQHLEQQLNEGLLSVKERKEELLMEQLEQSRVQEQRAMLENETLRRQANYNLNIILIFHYFYH. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00194 185 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca5g00194 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca5g00194 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca5g00194 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca5g00194 185 Coils Coil 149 169 - -
Seca5g00194 185 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Seca5g00194 185 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 151 - -
Seca5g00194 185 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Seca5g00194 185 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g00194 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca5g00194 185 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g00194 185 Coils Coil 86 113 - -
Seca5g00194 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca5g00194 185 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Seca5g00194 185 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Seca5g00194 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00194 Seca-Chr5 3691888 3696235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00194 1 183 MADS-box Gene Family AT5G13790 62.295 2.48e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca5g00194 K-box 7.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00194 - - zju:107417456 275.404