Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00191 ATGGGCAGAGTAGCAAGTTGTTCTGTTCTTCTATCATTTCTCATTCTTTCATTCTTTGTGATTGAAATCCATGGAAGTAATAGACAAGTTAAGGCTCTTGACAAACTTCAAAAGTCAAAATTCAGAGGAAGTTCAGAAATTGATGTGAGTGAGTTTGAGGTACAAGAGGTTGTCACTGATGCCATTGTTGATTCTCAAGAAGGACTGAAAGAGAAAGATAGGATTGAGAAGCTTCCAGGACAACCCCATGTGAGGTTTTCTCAGTATGGAGGGTATGTCACTGTGGATAAATTGGCTGGCAGTGCCTTTTACTATTACTTTGTTGAAGCTCAACATTCCAAAGAAACAAAGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCACTAGCCTATGGAGCAATGCAAGAACTTGGACCCTTTAGAGTAAACAGTGACGGCAAAACACTATACAGAAATAGATATTCATGGAACAATGTTGCAAATGTTCTGTTCCTGGAGTCACCTGTTGGAGTGGGATTTTCTTACTCAAACAAATCATCAGATTATAATGTGAATGGAGATAAGAAAACAGCTGCAGATAACTACAAGTTCTTGGTAAATTGGTTGGAGAGGTTTCCTGAATATAAGAAGAGAGAATTCTATATTTCTGGGGAGAGTTATGGTGGCCATTATGTTCCTCAACTTGCACATACTATTCTCTATCATAACAAAAAGGCAAAAAAGACTATCATCAACCTCAAAGGAATCATGATTGGGAATGCAGTGATCAATGATGACACAGACTCTCAAGGATTGTATGATTATCTTGCAAGCCATGCAATAATCTCAGACCAAGCAGCATATGATATCAACAAAGCTTGTGATTTCTCAGCACGTAATCAGACAAAGGAGTGCCATGAAGCCGCTGATGAATTTGACAATGATATTTCATACATTGATTTATACAACATTTATGCTCCTCTCTGCAAAAATTCCAATCTCACTGCCCTGCCCAAGAAGACTTCTGTAACCTTCAAATCTCAATCCTTACTAATTGATTATTTATATGTTGTGATTGATCCATGTAGTGAGTATTATGTGTATGCATATCTTAATAGAGGAGATGTTCAAGAGGCCCTACATGCCAATGTCACTAAGCTCAAATATGACTGGGAACCCTGCAGTGATGTCATTCAAAATTGGGTTGATAGTGCTTCAACAGTCCTTCCTCTTTTACATGAATTCATCAATAATGGCCTTAGAGTTTGGGTTTTCAGTGGTGACACAGATGGAAGGGTACCTATTACTTCAACAAAGTATTCTATTAACAAGATGAAGCTTCCCATTAAAACTGCTTGGCACCCTTGGTTTGCCTATGGAGAGGTTGGTGGGTATGCAAAAGTATACAAGGGAGGCCTAACACTTGCAACAGTGAGAGATGCAGGGCATCAAGTGCCAAGTTACCAACCAGCAAGAGCCCTTGTTTTGATCAAAAGTTTCTTAGATGGCACTCTTCTTTCTAATCCCAACACACATGCTTAG 1530 0.3915 MGRVASCSVLLSFLILSFFVIEIHGSNRQVKALDKLQKSKFRGSSEIDVSEFEVQEVVTDAIVDSQEGLKEKDRIEKLPGQPHVRFSQYGGYVTVDKLAGSAFYYYFVEAQHSKETKPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLYRNRYSWNNVANVLFLESPVGVGFSYSNKSSDYNVNGDKKTAADNYKFLVNWLERFPEYKKREFYISGESYGGHYVPQLAHTILYHNKKAKKTIINLKGIMIGNAVINDDTDSQGLYDYLASHAIISDQAAYDINKACDFSARNQTKECHEAADEFDNDISYIDLYNIYAPLCKNSNLTALPKKTSVTFKSQSLLIDYLYVVIDPCSEYYVYAYLNRGDVQEALHANVTKLKYDWEPCSDVIQNWVDSASTVLPLLHEFINNGLRVWVFSGDTDGRVPITSTKYSINKMKLPIKTAWHPWFAYGEVGGYAKVYKGGLTLATVRDAGHQVPSYQPARALVLIKSFLDGTLLSNPNTHA. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00191 509 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 74 486 IPR001563 GO:0004185|GO:0006508
Seca5g00191 509 FunFam Carboxypeptidase 69 327 - -
Seca5g00191 509 Pfam Serine carboxypeptidase 80 499 IPR001563 GO:0004185|GO:0006508
Seca5g00191 509 Gene3D - 358 395 - -
Seca5g00191 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Seca5g00191 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Seca5g00191 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 469 482 IPR001563 GO:0004185|GO:0006508
Seca5g00191 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Seca5g00191 509 SUPERFAMILY alpha/beta-Hydrolases 72 502 IPR029058 -
Seca5g00191 509 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Seca5g00191 509 Gene3D alpha/beta hydrolase 69 327 IPR029058 -
Seca5g00191 509 FunFam Carboxypeptidase 404 499 - -
Seca5g00191 509 ProSitePatterns Serine carboxypeptidases, histidine active site. 469 486 IPR033124 GO:0004185
Seca5g00191 509 Gene3D - 404 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00191 Seca-Chr5 3659129 3663532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00191 366 502 Calmodulin-binding Proteins AT2G22960 29.197 3.23e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00191 K16297 - gmx:100783864 782.326