Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00166 ATGAGTGGCTGCGGCGACGAAACGCGCGACGAACCCGGTGGAGGAGCGGAAGAGGAGCGCACACACGATGATGGTCTGAGGAACCACGACGACGCTGCCAGAGAGGAGAGGCATCGTGCACGGTGGCGATGGTATGGCTGTTGGCAGCACCGATCTGGTTGCGGGGAGGAGGAAGACGCACCAGTGTGCGTGACAGCCACTATTGTGGCTCAGTTGGAGAAGGAAAAAGTTTTGGGCTCATCTGATTCTGATTCAGGGAAAGGAAAGAGCAAGATGTCGAAGCATATAACTCATGGCTTTCACTTGGTGAAGGGAAGATCAGATCACGAAATGGAAGACTACCATGTTGCTCAATTTAAGCAAATTGATAACAATGAATTGGGTTTATTTGCAATATTTGATGGCCACTCAGGTCACAGTGTACCTAATTACTTGCGGTCTCATTTGTTTGATAATATCATAAAAGAGCCTGACTTCTGGACAGACCCAGCAGAAGCAATCAAGAGAGCATATAATGTAACTGATTCTACTATTTTAGAGAAATCAGGTGAATTGGGTAGAGGGGGTTCAACTGCAGTTACAGCAATATTGATCAATTGTCAGAAGTTAGTAGTGGCCAATATTGGTGATTCTCGGGCTGTCTTATGCAAGAATGGAGTGACCAAACAACTATCAGTGGATCATGAACCAAACATAGAAAGTAAGGATATAAAAAACAGAGGTGGTTTTGTATCAAACTTCCCAGGTGACGTTCCACGGGTTAATGGGCAGTTGGCAGTGTCAAGGGCATTTGGTGACAAAAGCCTAAAGAAAAATTTGAGCTCAGAACCATATGTGACAGTGAAGATAATAGATATGATGCAGAATTATATAGAATCAGCAAAAGCCAAAGAGATGTCTTTTATTGGCACCCAACAAAAGTGCAAGGCTTGTGACAAAACGGTCTATCCAGTTGATCAGCTATCTGCTGATGGTGTTGCTTACCATAAAGCTTGTTTCAAGTGCTCTCACTGCAAAGGAACGTTAAAGTTGAGCAACTATTCCTCGATGGAAGGTGTTCTTTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGACAGGCACTTTCAAGAAGAACTTTCAGTCACCTGCAAAGCTAGCTGACAAGACAACTCCTGAGCTGACAAGGTCCCCTAGTAAAGCTGCAAGTATGTTTTCCGGGACACAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCATTGGAGAAGCTAGGATTCAGAAACCTTATAAACAAATTATTTGATGATACATTATATTCTAGGGGTAAAAAACACCTGTGTTGCTTATAG 1335 0.4352 MSGCGDETRDEPGGGAEEERTHDDGLRNHDDAAREERHRARWRWYGCWQHRSGCGEEEDAPVCVTATIVAQLEKEKVLGSSDSDSGKGKSKMSKHITHGFHLVKGRSDHEMEDYHVAQFKQIDNNELGLFAIFDGHSGHSVPNYLRSHLFDNIIKEPDFWTDPAEAIKRAYNVTDSTILEKSGELGRGGSTAVTAILINCQKLVVANIGDSRAVLCKNGVTKQLSVDHEPNIESKDIKNRGGFVSNFPGDVPRVNGQLAVSRAFGDKSLKKNLSSEPYVTVKIIDMMQNYIESAKAKEMSFIGTQQKCKACDKTVYPVDQLSADGVAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFKKNFQSPAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKLGFRNLINKLFDDTLYSRGKKHLCCL. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00166 444 PANTHER OS06G0237300 PROTEIN 119 418 - -
Seca5g00166 444 ProSiteProfiles PPM-type phosphatase domain profile. 97 444 IPR001932 -
Seca5g00166 444 FunFam Probable protein phosphatase 2C 39 87 306 - -
Seca5g00166 444 SMART lim_4 307 359 IPR001781 -
Seca5g00166 444 ProSiteProfiles LIM domain profile. 306 366 IPR001781 -
Seca5g00166 444 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 334 374 - -
Seca5g00166 444 Pfam Protein phosphatase 2C 107 285 IPR001932 -
Seca5g00166 444 Gene3D - 87 296 IPR036457 -
Seca5g00166 444 SUPERFAMILY PP2C-like 93 285 IPR036457 -
Seca5g00166 444 MobiDBLite consensus disorder prediction 1 33 - -
Seca5g00166 444 Gene3D Cysteine Rich Protein 302 372 - -
Seca5g00166 444 SMART PP2C_4 92 326 IPR001932 -
Seca5g00166 444 MobiDBLite consensus disorder prediction 10 33 - -
Seca5g00166 444 CDD PP2Cc 98 285 IPR001932 -
Seca5g00166 444 Pfam LIM domain 308 363 IPR001781 -
Seca5g00166 444 CDD LIM1_SF3 304 366 - -
Seca5g00166 444 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 300 333 - -
Seca5g00166 444 ProSitePatterns LIM zinc-binding domain signature. 308 342 IPR001781 -
Seca5g00166 444 FunFam LIM domain and actin-binding 1 302 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00166 Seca-Chr5 3383467 3387717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00166 74 285 PP2C-type Phosphatase Gene Family AT3G15260 75.814 2.35e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca5g00166 PP2C 2.1e-38 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00166 K17506 - gmx:100787942 372.089