Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00160 ATGAAGAGATTGAGGTCGAGCGACGATCTCCACTCGTACGGTGATAATAAGAATGCCTGCAAGGATTCGAATCTGAATCGGTCCTTTTCTTCTTCTGCGCAGCGAAACTTTTACTACAAACCTGATAATGTGCGCAAGGGTTTGCTCTCTTCCTCGTCGTCACGCTACGACAGGGATCGGACGGTGGACGAGGATCGAGAGGCTTCGAGGTTGGTTCGGAAGCGATCGGAGCATGATTTCGAGGGTTTTGATCGGAGGAAAGGGTTCGATCGGTATAGGGATGGTGGTTATGGCAGTGGAGGAGGGGATAGGAGTTTGATTCACCGGTCGGAGAGTTTCTGTGGGTCTAGGAGGGAGTTTCCGAAGGGGTTCCGGTCGGAGAGGGACCGTTCGCGAAGGGAGGGAAGCGTGTCGTCGTGGAGAAGAGGGTTGAAGGATTTTGATGAGAGTGGTAGTAGAGGGAATAGAGTTGTTGGAGGCGTGGAGGAGAGAGTAGTTAGGTCTCCAAAGGGTTTGAGGGATGTGAAGTCTCCTACACGGTCGAAGGATTCTGAGAGTGAGCAATCTAAGAAGAGATCTTCTTCTCCTCCGAGAGGAGGGTTCAGAGATGCAAAGTCCAAGTCGAAGTCACCCTCTTGGTCTAAGGATTCTGAGAGCGAGCAGTCCAAGAGTGTTGAGGTGAAGAAAACTGAGGAGTTGCAGGTTCAGAGTGGTGGAACTGGAAGCAGTAGTGAAATGGAAGAGGGGGAGCTGGAACCTGAACCTGTACCTCAAACTGAACCACCCACTGAACCCGAAGCGGTTCCAAGAGATGCCTCAAAAGATGCCCCTGGAAGTGAAGATCAGCCCTCCGTCCCTTTGGAAACTGATGAGAAACAAGTTCAGAATGAAAGCCACCTCAATGACACAGATACTGCTATGGAAGAAAGACAGGAGGAAATATCTAGTAAGCAAGAGGTAAAACCTGATGAGGACATTGATCCTGAAGTAAAAGATGCAGGAAAAGAAGCTGATAAGCTGCCAGATATTCCAGATGATCCAAACGAGAAAATGCTTGTTACTGAGACTGAACTTGACTCCTTGGGTACGGATGATGAGAAAAAAGACGTGTGTTTGAAAGGAGATACCCAGTGCAAGGAGGAAGCAGAGAATGGGGCTGATAAGGAGAAGGTCTTGTTTAATGAAGAGGAGCACAGGCATGGCAAGGGTGTAGATCTTGTAACCAGGGCAGTTGCTAGCAAACCTGAGTTAAATGATGAAGTCTCAACAGAAAATGAAGTTCCCAAAGAAGAAAATAGAGAGATGATAATGGAGAGTGTGACCAACAGTGCAAAGGATAAAGGCAAAAGCGTTTCTGTTACAGCTGCTGATGTTGCTCATCCTTCAGAAGTTGTCTTATGGATTGATAGAGAATCAAGAGATCTCGCAACATGCTCTGCTGATGTCATGGAAGGTCCAAGCACAAGAGGATTTGAGTTGTTTTCTAGATCTCCTGTGAGAAAAGTGGAGAAATCAGACCACTCAGTTCTCAATAAGCAAAAGGATGACAGTCTTGCAATGGAGCAGCTTGATCTTACTCTTAGTTTGCCAAATGTTCTGTTACCTATTGGTGTTCATGAGACAACAACACAAGCCCCTGGATCTCCCAGTCAGGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCCATGTCATTTTCAGGTTCCCCATCATTCTATCACAATCCAAGCTGTTCTCTAACAAAAAATTCAGTGGACTATGAGCAATCTGTTGGCAGTCGGCCCTTATTTGGGGGAATAGATTGGCAAGGCCAGTCTCAGAATGATCCCAAACAGAAAGAAGTTCCTTTTGGTCAGAGAACTTCTATGAATGGAAATGGCTCCTTTTACCAGTCTCAAGCATCATGGGGCGTTTTAGATGGTCAGGCTGTGAAAGGTCAACATTCTAGGGTTCTAGAAGGGAGCTCAAAAATGGGCAGTGGACTTGACAAGCAGTTGAGTTTTCATAAGCAGCTATCAGGACAGTCAAGACGCCATGATGATGTTAGATCTCCTTCCCAGAGTGTTGGGTCTCATGACATTGGATCAAATTATAGTTTTGAGAAAAAGAGGGAGGTTAGGGACAGGGGTAATGGCAGTCTGTATCGAACTACTAGCCAGAAGGAACAAGAACAACTTCTGATGGGTGGAGTTGATTTTGTTGAGACAATCATTGCAAGAATAGTTTCTGAACCCGTGCATGCAATGTCCAGAAAGTTCCATGAAATGACTGGACAATCCATAGCATGTCTGAAAGAGGGTATTCGAGAAATCATGCTCAATACAGATAAGCATGGACAGATACTTGCTTTTCAAAAAGTTCTGCAGAACAGGTCAGATATAACCTTGGATGTCCTACTGAAGTGCCACCGAGTGCAACTAGAAATTTTGGTTGCTTTGAAAACAGGGTTAACTCAGTTTCTTCACTTAGATGACAGCATTTCATCTTCTGATTTAGCTCAAGTTTTTCTGAGCTTGAGATGTAGAAATCTTTCATGTCGAAGTCAGTTACCTGTAGATGAATGTGATTGCAAGGTTTGTGCACAAAAGAATGGTTTTTGCAGGGAGTGTATGTGTCTTGTGTGTTCCAAGTTTGACAATGCGTCAAATACATGTAGTTGGGTTGGGTGTGATGTCTGCCTTCATTGGTGCCATACTGATTGTGGATTGCGAGAATCTTATATTAGAAATGGACATAGTACTACTGGGACAAAAGGGATGACTGAGATGCAGTTTCACTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCACAATTTTGCAAAAGAATGGTCAGTTGAAACTCTTTGCAAGGAGCTTGAATATGTGAAGAGAATTTTTTCTGCCAGCAAGGATATGAGAGGGAGACAGTTGCATGAGATTGCAGATCAAATGCTACCAAGGTTGGCGATCAAGTCTAACCTTCCTGAGGTTTTGAGACACATCATGTCTTTCCTTTCTGATTCTGATTCTTCTAAATTAGCCATGCCAACAAACTTTTCTGGGAAGGAACATGTAAAAGAAAATAACGGGGTTGCTGGGCCCAGCCAGGAAGCTGCTTGGCTGAAATCTATTTACTCAGAAAAGCCACCTATGTTAGAAAGGCCTGCAAATATCCTTCCTAGCTTTGACCACAATGATAAAAGGTCTCTTGCGCAAGAGTTGCAGATGAGTATTGCCCAAAAGGACTTGTGTTTTGATGAATTGGAGAGTGTAGTGAAAATCAAACAGGCAGAGGCTAAAATGTTCCAATCTCGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTGAAACGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATACCAATCGAATTGCCAAGTTGCGATTGGCTGAGACTGATGAAATGCGTAAACAAAAATTTGAAGAACTCCAAGCATTAGAGAGGGCACATCTGGAGTATTTGAACATGAAAAGGAGAATGGAGGCAGACATTAAAGATCTTTTATCCAAAATGGAAGCTACTAAAATGAGCCTTGCCATGTGA 3606 0.4401 MKRLRSSDDLHSYGDNKNACKDSNLNRSFSSSAQRNFYYKPDNVRKGLLSSSSSRYDRDRTVDEDREASRLVRKRSEHDFEGFDRRKGFDRYRDGGYGSGGGDRSLIHRSESFCGSRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESGSRGNRVVGGVEERVVRSPKGLRDVKSPTRSKDSESEQSKKRSSSPPRGGFRDAKSKSKSPSWSKDSESEQSKSVEVKKTEELQVQSGGTGSSSEMEEGELEPEPVPQTEPPTEPEAVPRDASKDAPGSEDQPSVPLETDEKQVQNESHLNDTDTAMEERQEEISSKQEVKPDEDIDPEVKDAGKEADKLPDIPDDPNEKMLVTETELDSLGTDDEKKDVCLKGDTQCKEEAENGADKEKVLFNEEEHRHGKGVDLVTRAVASKPELNDEVSTENEVPKEENREMIMESVTNSAKDKGKSVSVTAADVAHPSEVVLWIDRESRDLATCSADVMEGPSTRGFELFSRSPVRKVEKSDHSVLNKQKDDSLAMEQLDLTLSLPNVLLPIGVHETTTQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSPSFYHNPSCSLTKNSVDYEQSVGSRPLFGGIDWQGQSQNDPKQKEVPFGQRTSMNGNGSFYQSQASWGVLDGQAVKGQHSRVLEGSSKMGSGLDKQLSFHKQLSGQSRRHDDVRSPSQSVGSHDIGSNYSFEKKREVRDRGNGSLYRTTSQKEQEQLLMGGVDFVETIIARIVSEPVHAMSRKFHEMTGQSIACLKEGIREIMLNTDKHGQILAFQKVLQNRSDITLDVLLKCHRVQLEILVALKTGLTQFLHLDDSISSSDLAQVFLSLRCRNLSCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTKGMTEMQFHCIACDHPSEMFGFVKEVFHNFAKEWSVETLCKELEYVKRIFSASKDMRGRQLHEIADQMLPRLAIKSNLPEVLRHIMSFLSDSDSSKLAMPTNFSGKEHVKENNGVAGPSQEAAWLKSIYSEKPPMLERPANILPSFDHNDKRSLAQELQMSIAQKDLCFDELESVVKIKQAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYTNRIAKLRLAETDEMRKQKFEELQALERAHLEYLNMKRRMEADIKDLLSKMEATKMSLAM. 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00160 1201 Pfam PHD - plant homeodomain finger protein 850 973 IPR032881 -
Seca5g00160 1201 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1198 IPR004082 -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 419 433 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 413 433 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 1 27 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 706 720 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 605 635 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 86 351 - -
Seca5g00160 1201 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 815 830 IPR004082 -
Seca5g00160 1201 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 960 979 IPR004082 -
Seca5g00160 1201 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1135 1157 IPR004082 -
Seca5g00160 1201 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 761 783 IPR004082 -
Seca5g00160 1201 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1096 1116 IPR004082 -
Seca5g00160 1201 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 800 815 IPR004082 -
Seca5g00160 1201 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 841 862 IPR004082 -
Seca5g00160 1201 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 887 907 IPR004082 -
Seca5g00160 1201 Coils Coil 1102 1140 - -
Seca5g00160 1201 Coils Coil 1150 1198 - -
Seca5g00160 1201 CDD PHD_OBE1_like 880 939 IPR047578 -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 166 230 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 1 16 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 40 71 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 609 635 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 110 152 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 52 71 - -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 678 720 - -
Seca5g00160 1201 Pfam Coiled-coil region of Oberon 1074 1189 IPR032535 -
Seca5g00160 1201 MobiDBLite consensus disorder prediction 292 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00160 Seca-Chr5 3299755 3305265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00160 850 998 PHD Gene Family AT5G57380 27.517 3.92e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00160 - - gmx:100817003 1704.11