Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00142 ATGCAGAAAAGAGTGGGTGCTCTTCAAGAATTAAGGCGTTTGCTGTCAAGATATGAATTTCCTCATGTTGAGTCTGCTCTTAAAGCTGGAGTTTATGTATGCCTTGGGCTTGCTGCATCCATGGGTGCATTTATCCTTGCTTCTGGTTCAAAAGGGAAGAGATATTGTATGCCTAATTCAAGAGTTATGATCCATCAGTCGCTTGGAACTGCTGCTGGTTTTGGAATTATTATTGATATGCAGAGAGGATGCACATATGGGATAGCTTGCATGTCATGGGCACTTGTTTTCTGGTATGCTGGTGTTTTTATCAGGAATGGACAGACAGATGGAGGCAAAGCATTCACAACTATTTTCTCTGCCATTGTTGGTGGCATGAGTTTGGGTCAGTCATTTTCAAATTTAGGTGCTTTCAGCAAAGGCAAAGCAGCTGGATACAAATTGATGGAAGTCATTAAGCAGAAACCTACCATAGTAGGGAACTTTTACACACAAGAAAGAGACAAGATGAGACACGGTATGTCTTCTCTGTCTCCCATGTTAGCTGAGGAGCTGTTTCGATGTGAGTTGTCAAATAATGAATTTCATTCTCAAGCTCTTAGCCCAGATATGACAAAGTTAAAGAAAACCAATGTAACACTAGACAATTCCTTAAGCCCAGCTCATACACTGCTTCAAATACGATGTGCTGATCACAAGGGTCTTCTTTATGACATTATGAGAACTTTGAAAGACATGAATATGAAGTCAACTCTGAGCAAGGAAGACCATAATTATGCCATCTGA 786 0.4046 MQKRVGALQELRRLLSRYEFPHVESALKAGVYVCLGLAASMGAFILASGSKGKRYCMPNSRVMIHQSLGTAAGFGIIIDMQRGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTTIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEVIKQKPTIVGNFYTQERDKMRHGMSSLSPMLAEELFRCELSNNEFHSQALSPDMTKLKKTNVTLDNSLSPAHTLLQIRCADHKGLLYDIMRTLKDMNMKSTLSKEDHNYAI. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00142 261 Gene3D ABC transporter type 1, transmembrane domain 63 181 IPR036640 GO:0005524|GO:0016020
Seca5g00142 261 SUPERFAMILY ClpP/crotonase 31 73 IPR029045 -
Seca5g00142 261 SUPERFAMILY ABC transporter transmembrane region 81 156 IPR036640 GO:0005524|GO:0016020
Seca5g00142 261 PRINTS Clp protease catalytic subunit P signature 53 72 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca5g00142 261 PRINTS Clp protease catalytic subunit P signature 32 49 IPR001907 GO:0004176|GO:0004252|GO:0006508
Seca5g00142 261 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 33 80 IPR023562 -
Seca5g00142 261 Pfam Clp protease 30 73 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00142 Seca-Chr5 2911640 2913370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00142 59 161 Calmodulin-binding Proteins AT2G36910 38.835 2.94e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00142 K05658 - sspl:121767770 162.54