Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00140 ATGGCAGCTAATGAATGTAAAAGGAATAAAAGAGAGGCAGAGATCAAGCTGGGGGAGCTGGACAGGAATATGAATTCTATAAAGCTGCGACTTTTTGTTGTTTTCTTTCTGTTCTTTCAGAGGCGTTGTATAAATGCTGGTAGAAGTCTTAGTTCTAAGAAGATAGCTTTGGAAGAGGCCATGCATCAGCATGCTGCTGAAAGTAGCTCAACACCTTTGCCCTCAGTTGATGAGATTATTGAAGCAATTTCAGAAGTCAAGAAAAAAATAAAAGAAGAGCATGTCTTGTTGGAAGGCCTTGAGCAGAGGAGGCTTGAAGCAGTAGGAAAAGAAGATGATCTTAAAGTAAAATTTGACAAACTGTGTGAATCAACGAAAGGGGAAATTTCTGCCCTTGAGAAAGCCGAGAGTGAACTTATGGAGATTGAAAGAGAAATGGATTCGGCAAATGAGAAGAAGAATCATTATGACGGTGTCATGAAAAACAAGGTTCTACGTGAAATTAAGGAGGCAGAGGAACACAATCTGGAGCTTACAAAGACGCGTGAGGAGAATTTTGAAAAGGCTTCCATAATTTGCTGTCAGAATGAACTTGATTCATTAGGAGGTTGTGATGGGAATACCCCAGAGCAAATCAGTGCCCAATTGCAAAGCCTAAATCAGACACTTAGGCGTGAGAGCCAAAGGTTCTCTGAATCAATTGATGATCTTAGGATGCTGTATGCAAAAAAAGAACGGAAGATCATGAAAAGACAGCAAGTTTACAAAGCCCTTCGACAGAAATTGGATGCTTGCCAGAGAGCCTTACAGTTACGAAGGAGCAAGTTTCAGAGAAATGCAACTTATCTGAAGCACCAACTTTCTTGGAAATTTAATGGCCATTTGAGAAAGAAGGGGATCAGTGGACTTATCAAAGTTAATTATGAAGCGAAATCCTTATCGATTGAGGTACAGATGCCCCAAGACGCATCAAACAGAGCTGTCCAAGACACCAGGGGTCTTTCAGGTTTGTTTGTAGGATAA 1023 0.4066 MAANECKRNKREAEIKLGELDRNMNSIKLRLFVVFFLFFQRRCINAGRSLSSKKIALEEAMHQHAAESSSTPLPSVDEIIEAISEVKKKIKEEHVLLEGLEQRRLEAVGKEDDLKVKFDKLCESTKGEISALEKAESELMEIEREMDSANEKKNHYDGVMKNKVLREIKEAEEHNLELTKTREENFEKASIICCQNELDSLGGCDGNTPEQISAQLQSLNQTLRRESQRFSESIDDLRMLYAKKERKIMKRQQVYKALRQKLDACQRALQLRRSKFQRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEAKSLSIEVQMPQDASNRAVQDTRGLSGLFVG. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00140 340 Coils Coil 83 103 - -
Seca5g00140 340 Coils Coil 3 30 - -
Seca5g00140 340 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 6 336 - -
Seca5g00140 340 Coils Coil 161 181 - -
Seca5g00140 340 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00140 Seca-Chr5 2889477 2896033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00140 46 336 Structural Maintenance of Chromosomes family AT5G61460 50.172 1.03e-82 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00140 K22804 - gmx:100816916 482.641