Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00137 ATGAAGCGACCAAGAGACACGGGGGATTCCAGTTCTAGGGTTTCGCCTTCTCTTCAGGCAGGCATAATCAAGAGACTTCGATTGGAGAACTTCATGTGCCATTCCAACCACGAGACTGAGTTCGGAAGCCACGTCAATTTCATCACTGGCCAAAATGGAAGTGGCAAGAGTGCAATCCTAACTGCTTTGTGTGTTGCATTTGGTTGTCGAGCAAAAGGAACTCAAAGGGCATCCACTTTGAAGGATTTCATTAAAACTGGTGCCAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTTAAGCCTGAAATATATGGTGAAGTTATCATTGTAGAACGTAGGATATCTGAATCTGCAACCTCTACTACCTTAAAAGATCACCAAGGAAAGAAAGTTTATAGTCGGAAAGCAGATCTTCAAGAAATTATTGAACATTTTAATATTGATGTTGAGAATCCATGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCGGGGAATAACAAAGATAAATTTAAGTTTTTTTACAAGGCCACGCTACTTCAGCAAGTCAATGATCTTTTGGAAAGCATTTCCAATGAATTAACTGGTGCACATGGAATAGTTGAAGAATTAGAAACTGCAATAAGGCCCATAGAGAAAGAGCTTGATGAGCTGCAGGTGAAAATTAAAACTATGGAGCATGTTGAACAAATATCCATAAAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTCGACAAGAAACTCGAGGAACAAAATGCAAGGATTGAAATGTTGAAGAGCCGGATACCTATCTGTCAAGCTAAGATTGATCAACAACGGGATCAGATTGAAAAATTGAGGGAAAGCTGCTCTAAGAAGAAAGCTGAAATTGCAACTATGTTGGAAACGACATCACAAATTAAGCAAATGAAGGAGAATTTAAGTCAGTCTTTGTCCTTGGCAACAAAAGAAGCATTTGAACTTAGGCGAGATTGCAAATCCAAAACTAGCCACATACAGAAGATGGTACAACAACGCAAAATGCTTGAACAACAAATGCGGGATATTCATGAGCAGCATGCAAAAAATACTCAGGTTCTACAAGTCCCTAGTTATGGATAA 1146 0.3866 MKRPRDTGDSSSRVSPSLQAGIIKRLRLENFMCHSNHETEFGSHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGEDAFKPEIYGEVIIVERRISESATSTTLKDHQGKKVYSRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISNELTGAHGIVEELETAIRPIEKELDELQVKIKTMEHVEQISIKVQQLKKKLAWSWVYDVDKKLEEQNARIEMLKSRIPICQAKIDQQRDQIEKLRESCSKKKAEIATMLETTSQIKQMKENLSQSLSLATKEAFELRRDCKSKTSHIQKMVQQRKMLEQQMRDIHEQHAKNTQVLQVPSYG. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00137 381 Coils Coil 347 367 - -
Seca5g00137 381 Coils Coil 210 230 - -
Seca5g00137 381 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 18 373 - -
Seca5g00137 381 Gene3D - 23 275 IPR027417 -
Seca5g00137 381 Coils Coil 284 311 - -
Seca5g00137 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 326 IPR027417 -
Seca5g00137 381 Pfam AAA domain 25 261 IPR038729 GO:0006302|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00137 Seca-Chr5 2854871 2860692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00137 20 376 Structural Maintenance of Chromosomes family AT5G07660 61.625 3.83e-156 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00137 K22804 - gmx:100816916 585.874