Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca5g00127 | ATGGACGCTGTTGATTCGAACCTTCCCTACGATCCACTTCCTCAGAACGTTACAGCATCAGAGCATCACAGCACATCGCAACATGGATCCGAAACCCTAGATTCCGCTGATCAAATCGGGAACGGTATTAACGGAAACCCATCGGAGAACGGCCAGAGCGTTGCCAATACCGATTCGCATCCTCAGATTGCGAAACCCTTGATCTCAGAGAATGGTTTTACCGGTAATACCCGCAGTGGCACCACCGACAAGGATCAATCTGGCGGCGAGGAGGAGACTACCAGCAAGCGCCGTCGCCGAAGCCGGTGGGACCCGCAGCCCGATTCCAACGACCAGAGCGGTGGCGAAGGTGCCGGAACGAAGAAGAGGAAGTCTCGTTGGGCCGACGATGAGCCAAAGCCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAATTCGATCCTGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTAGAATGTTACAATCAGGTTTGCCTTTAGATGATCGCCCTGAAGGTGCTCGATCTCCTTCACCTGAACCTATATATGACAATATGGGCATTAGGATTAACACTAGAGAGTATCGTGCGCGTGAGAGATTGCAAAAAGAGAGGCAAGAAATTATATCTCAGATTATAAAGAAAAATCCCGCATTTAAGCCACCTGCAGATTATAGGCCGCCAAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATACCCTGGTTACAATTTCATAGGGCTTATTATTGGTCCTAGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACCGGTGCTAAAATTGTAATTCGAGGTAAAGGGTCGGTGAAAGAAGGCAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTCTTGGTGGAGGCAGAGACGCAGGAGTCTCTTGATGCTGCTGCAGGAATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTTTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCGGCCTTGAATGGGACCATTAGGGACGAAGAGTATTGCCGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCATGCCCTACGAGGACTTCGACGTTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTAGCAGAGCTGGGAGGTACAGTTCCTGAGTCTGCAACAAAGCAAACCAGTACATTGGCAATTGGTTCTGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTTCTACTGGTGGGGCACCACAAGCTGGCTTAGGGGCTGCTGCAGCTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGATGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATCAAGGATCGAATGTCTGGTTTAAGTAAAGGATATGGGTTTGTGAAGTATGCTGATGTAACAATGGCAAACAATGCAATCTTAGCCATGAATGGTTATCGCCTTGAGGGTCGAACTATTGCAGTCAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCAGCTTCTGCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATGCTACCGGTGGTCCTCTTGCAAGTGCTCCTCCTGGGAGTTATGGTGCTACACCAGTCCCATGGGGGCCTCCTGTTCCTCCCCCATACGCACCTTATGCTCCTCCTCCACCTGGTTCAACTATGTATCCTCCTATGCAAGGTCAACCTATGCCTCCTTATGGAGTTCAATATCCTCCCGTCCAGACAGGCCCCCCTGGTGCCCCGTCCCAGCCTGCGACTTCTAGTGAAGCACAGCAGAGTTACCCCCCTGGAGTGCAGTCTGACAATAGTACCTCTTCTCAGCCTGTACCAGCCAATATATATGGGAGCACAATACCTTCAATGCCACCGACAGCTCAGCCTACATATCCTGCATCCTATGGATATCCGCCTTACTACAATGCAGTACCTCCACCACCTCCCCCTCCTGCCCCAGTCCCTGTCTCTTCAGACCAATCCCACAGTATTGTAAATGCACCTTGGGCCAATAATCCTCTGGTTCCACCTCCCCCACCATCTGCAGAGAAGACAACGTATGGTGCAGATCAATCCCAGAGCATCGGAAATGTGCCTTGGGCAGCAAATCCACCACTGCCTCCTGCTTCATCAGCTGAGAAGACATCACATGGAGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA | 2397 | 0.4919 | MDAVDSNLPYDPLPQNVTASEHHSTSQHGSETLDSADQIGNGINGNPSENGQSVANTDSHPQIAKPLISENGFTGNTRSGTTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQSGGEGAGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGSGNSGSNPPWANNSGSTGGAPQAGLGAAAAKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADVTMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYATGGPLASAPPGSYGATPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPVQTGPPGAPSQPATSSEAQQSYPPGVQSDNSTSSQPVPANIYGSTIPSMPPTAQPTYPASYGYPPYYNAVPPPPPPPAPVPVSSDQSHSIVNAPWANNPLVPPPPPSAEKTTYGADQSQSIGNVPWAANPPLPPASSAEKTSHGADSEYEKFMAEMK. | 799 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 424 | 458 | - | - | |
| Seca5g00127 | 798 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 471 | 549 | IPR000504 | GO:0003723 | |
| Seca5g00127 | 798 | SMART | c2hcfinal6 | 381 | 397 | IPR001878 | GO:0003676|GO:0008270 | |
| Seca5g00127 | 798 | SMART | c2hcfinal6 | 355 | 371 | IPR001878 | GO:0003676|GO:0008270 | |
| Seca5g00127 | 798 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 473 | 542 | IPR000504 | GO:0003723 | |
| Seca5g00127 | 798 | SUPERFAMILY | Retrovirus zinc finger-like domains | 352 | 398 | IPR036875 | GO:0003676|GO:0008270 | |
| Seca5g00127 | 798 | PANTHER | RNA-BINDING PROTEIN RELATED | 85 | 592 | IPR045071 | - | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 649 | 691 | - | - | |
| Seca5g00127 | 798 | Gene3D | K Homology domain, type 1 | 231 | 353 | IPR036612 | GO:0003723 | |
| Seca5g00127 | 798 | SMART | kh_6 | 234 | 326 | IPR004087 | GO:0003676 | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 117 | 133 | - | - | |
| Seca5g00127 | 798 | ProSiteProfiles | Zinc finger CCHC-type profile. | 356 | 370 | IPR001878 | GO:0003676|GO:0008270 | |
| Seca5g00127 | 798 | FunFam | splicing factor-like protein 1 | 451 | 553 | - | - | |
| Seca5g00127 | 798 | SMART | rrm1_1 | 472 | 545 | IPR000504 | GO:0003723 | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 84 | 106 | - | - | |
| Seca5g00127 | 798 | ProSiteProfiles | Type-1 KH domain profile. | 249 | 321 | - | - | |
| Seca5g00127 | 798 | FunFam | splicing factor-like protein 1 | 226 | 354 | - | - | |
| Seca5g00127 | 798 | Pfam | KH domain | 249 | 297 | IPR004088 | GO:0003723 | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 11 | 83 | - | - | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 424 | 454 | - | - | |
| Seca5g00127 | 798 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 234 | 360 | IPR036612 | GO:0003723 | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 622 | 691 | - | - | |
| Seca5g00127 | 798 | CDD | KH-I_BBP | 233 | 326 | - | - | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 170 | 189 | - | - | |
| Seca5g00127 | 798 | ProSiteProfiles | Zinc finger CCHC-type profile. | 382 | 396 | IPR001878 | GO:0003676|GO:0008270 | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 716 | 798 | - | - | |
| Seca5g00127 | 798 | Gene3D | - | 437 | 553 | IPR012677 | - | |
| Seca5g00127 | 798 | Gene3D | - | 148 | 226 | IPR047086 | - | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 1 | 135 | - | - | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 279 | 299 | - | - | |
| Seca5g00127 | 798 | Pfam | Splicing factor 1 helix-hairpin domain | 123 | 230 | IPR032570 | - | |
| Seca5g00127 | 798 | Gene3D | - | 354 | 407 | - | - | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 622 | 648 | - | - | |
| Seca5g00127 | 798 | FunFam | splicing factor 1 | 354 | 407 | - | - | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 752 | 766 | - | - | |
| Seca5g00127 | 798 | MobiDBLite | consensus disorder prediction | 784 | 798 | - | - | |
| Seca5g00127 | 798 | SUPERFAMILY | RNA-binding domain, RBD | 466 | 559 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca5g00127 | Seca-Chr5 | 2667738 | 2673004 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca5g00127 | 471 | 662 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 26.829 | 3.49e-12 | 67.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca5g00127 | K13095 | - | gmx:100800982 | 1191.02 |