Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00106 ATGGCTCGTGGAAAGGTTCAGCTGAAGAGAATTGAGAACCCGGTGCACAGACAAGTTACCTTCTGCAAGCGACGAGCAGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGTTGTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCACCACCAAAGGAACCATGCAAGGGCTAATGGAGAGGTACAAGAAGTTCACAAGGGGGACTCAGTCTGAAGCTGAAGCAGTCACTGAAGCACATCCTCTGGATGCTAAAGAGGAAACCAATGTGCTGAAACAAGAAATTGAAACATTGCAAAAGGGCATCGGGTATTTGTTTGGAGGAGGAATTGGGACAATGGCAATGGATGAATTACTAGTGCTAGAGAAGAATCTCGAAATTTGGATTCATTATATCCGCTCAATGAAGATGAACATCATGTTACAAGAAATTCAAGCTTTGAGAGACAAGGAGGGGACACTTACAGCGGCAAATAAATATCTTCACGACATGATTGTGGAGAATACGTCAGTTATTAACTTTGCTCCATTTGCTACCGATACTTTGTACCCATTAATTATACAAGATGGGGTTTTTCAGCTCTAG 609 0.4335 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELTTKGTMQGLMERYKKFTRGTQSEAEAVTEAHPLDAKEETNVLKQEIETLQKGIGYLFGGGIGTMAMDELLVLEKNLEIWIHYIRSMKMNIMLQEIQALRDKEGTLTAANKYLHDMIVENTSVINFAPFATDTLYPLIIQDGVFQL. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00106 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca5g00106 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca5g00106 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 143 - -
Seca5g00106 202 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Seca5g00106 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Seca5g00106 202 Pfam K-box region 92 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g00106 202 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca5g00106 202 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Seca5g00106 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca5g00106 202 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Seca5g00106 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca5g00106 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca5g00106 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00106 Seca-Chr5 2343561 2352941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00106 1 202 MADS-box Gene Family AT1G71692 62.085 1.19e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca5g00106 K-box 5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00106 - - gmx:100815314 315.079