Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00105 ATGAATACTACTTTTTCTCATGTTCCCCCTGGTTTTAGGTTCCATCCCACAGATGAAGAACTTGTTGACTACTACCTTAGGAAGAAAGTTGCATCAAGGAGGATTGACCTTGATGTCATTAAAGATGTTGACCTTTACAAAATTGAGCCTTGGGATCTTCAAGAGATTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCACAAGGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCGGCAGGATTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCAAAGCATGACTTGATAGGAATGAGGAAAACCTTAGTCTTTTATAAAGGAAGAGCTCCAAATGGACAAAAATCAGATTGGATTATGCATGAGTATCGCCTTGAGACTGATGAAAATGCCACACCACAGGCAACCTTTTTTTTTTTTTTTGTATGGTTAAAGCAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACCATGCGTAAAGTGAGTGAACATGACTCTCCTTGTTGGTATGAAGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAACAAACCTCTCAATCCAATTTGGTCTATCAACTTCCATATCCTTGCAAGAAAGAGCTTGATTTGCCATATCAATTGCCTAGGGATCAGTTTCTCCAGCTTCCACTTCTTGAGAGCCCAAAACTGCTTCAATCTTCCACCATGACACCATATGGACTAGATCATCATGCAACTGCTCTGCTTCCCTCATCACTCCTACAACAAGAAGATCAACAACAGCAAAACTTTCAGACAATGTTGTATAGCAATAATAATGAACAAGGTGCAGTTGATCAAGTCACTGATTGGAGAGTGCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGCATCCAAAGACAACAACAACAACAACATCTTTCATGGCACAGACAATGTACAACATTTGGACAAACAAGAAATGTTGTTGGTGCCTGCAGCAGCAGCAGAAATGAATGCCTCAACATCAAACTCCAGCTGCTGTCCAATTGATTTGTGGAAATAG 1083 0.4017 MNTTFSHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENATPQATFFFFFVWLKQEEGWVVCRVFKKRVTTMRKVSEHDSPCWYEDQVSFMQDLDSPKQTSQSNLVYQLPYPCKKELDLPYQLPRDQFLQLPLLESPKLLQSSTMTPYGLDHHATALLPSSLLQQEDQQQQNFQTMLYSNNNEQGAVDQVTDWRVLDKFVASQLSQDASKDNNNNNIFHGTDNVQHLDKQEMLLVPAAAAEMNASTSNSSCCPIDLWK. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00105 360 ProSiteProfiles NAC domain profile. 8 169 IPR003441 GO:0003677|GO:0006355
Seca5g00105 360 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Seca5g00105 360 Gene3D NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
Seca5g00105 360 FunFam NAC domain-containing protein 17 173 - -
Seca5g00105 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 303 - -
Seca5g00105 360 SUPERFAMILY NAC domain 5 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00105 Seca-Chr5 2306850 2310797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00105 4 360 NAC Transcription Factor Family AT1G12260 53.665 3.68e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca5g00105 NAM 3.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00105 - - gmx:100809525 540.806