Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00104 TCCCTCCCTGCCACTCTAAGCTATATACTATATATAAGTACTAATTGGCACCCGAATCCAGAAAAGAAAAGAAAAGAAAAAGAATTAAAATCATCATCAACACCAAAAATTGAAATGGCAATGATGGGAAAGATACTCTTGACACTGTTATTGTTGTCATCAATTTTCTCAATAGCCACATCCAAAAGAAGATCTTCCAGCAACAACATAGATTGGTGGTGCAACCAAACCCCACACCCTGAACCATGCAAATACTACATAAAACAAAGCCACCACCACTACCCTCACAAGCTCAAACACAAATCCCAATTCCGTGAAATCCTTATTCACTTGGCATTACAGAGAGCCGTTATCATGCAAAAGCAAGCACGTGATTTCGGCCAAAATTGGGTCACAAAGAAACAGAGATCCGTTTCCCGTGACTGTTTGAAACTCTATAGCAACACCGTTTTCCATCTCAACCGTACATTCCACGACCTCCATCTGAAGAAGAGGTGTTCACCGTTCGATGCACAAACGTGGCTGAGCACTGCTCGAACGAACATTGAGATATGCCGAAACGGTGCGTCGGAACTGAGGATCCCAGATTTCATAGCACCCATAACGAGGAACAATGTGACAGAGATTATAAGCAATAGCTTATTCGTGAATTGGGGATTTGTGAAACATGAAGCGAGTGGTTATTACACGGATGACATGTTTCCGAGATGGTTTTCTCCACATGAGAGGAGGCTTTTGCAGACTTCTTCTTCTTCAGTGAAGGCTCATCTTGTGGTAGCAAAAGATGGTTCAGGGCATTTCAGAACAGTTCAAGGTGCCATCAATGCAGCGGCAAGGAGGAAGTTCAAAACGAGGTTTATTATATATGTGAAGAGAGGGGTTTATAGAGAGAATATTGAGGTTGATAAGACGAACGATAACATCATGTTGGTTGGTGATGGGATCAGATATACGATCATAACAAGTGGAAGGAGCGTTAAGCAAGGATTTACCACCTATAGCTCTGCAACTGCAGGGATTGATGGTCTTCACTTCATTGCACGTGGCATTTCCTTCCAAAACACGGCGGGACCATTGAAGGGTCAAGCAGTGGCACTTCGATCAGCCTCTGATCTCTCTGTCTTCTACCGATGTGCCTTTGTGGGATACCAAGACACTCTCATGGTTCATGCACAGCGTCAATTTTACAGAGAATGTTACATCTATGGCACCGTTGACTTCATCTTTGGCAATGCTGCTGTTGTTTTCCAAAACTGCATGATTCTTGTGAGAAGGCCTTTAAATGGTCAAGCAAACATGATCACAGCACAAGGTAGAGATGACCCTTTTCAAAACACAGGGATTTCAATTCACAATTCTCAAATTAGGGCTGCTCCTGACCTCAAGCCCGTTCTTTCCAAATTCAACACTTTCTTGGGCCGTCCTTGGCAGAGATACTCAAGAGTTGTGGTCATGAAAACGTTCATGGATAGTTTGGTGAGCCCAATGGGCTGGTCTCCATGGGGGAATACTAATTTTGCTCAGAGTACTCTTTTTTATGGAGAGTATAAGAACTTTGGGCCTGGTTCATCTACAGCAAACAGGGTTCGATGGCCTGGTTTTCATGTTATAACAAGCCCAACTGAGGCATCGAGCTTCACTGTTGCTAATCTCCTTGCTGGACGCACGTGGTTGCCTGCCACTGGCGTGCCATTCACTTCTGGCCTTTAA 1710 0.4386 SLPATLSYILYISTNWHPNPEKKRKEKELKSSSTPKIEMAMMGKILLTLLLLSSIFSIATSKRRSSSNNIDWWCNQTPHPEPCKYYIKQSHHHYPHKLKHKSQFREILIHLALQRAVIMQKQARDFGQNWVTKKQRSVSRDCLKLYSNTVFHLNRTFHDLHLKKRCSPFDAQTWLSTARTNIEICRNGASELRIPDFIAPITRNNVTEIISNSLFVNWGFVKHEASGYYTDDMFPRWFSPHERRLLQTSSSSVKAHLVVAKDGSGHFRTVQGAINAAARRKFKTRFIIYVKRGVYRENIEVDKTNDNIMLVGDGIRYTIITSGRSVKQGFTTYSSATAGIDGLHFIARGISFQNTAGPLKGQAVALRSASDLSVFYRCAFVGYQDTLMVHAQRQFYRECYIYGTVDFIFGNAAVVFQNCMILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDLKPVLSKFNTFLGRPWQRYSRVVVMKTFMDSLVSPMGWSPWGNTNFAQSTLFYGEYKNFGPGSSTANRVRWPGFHVITSPTEASSFTVANLLAGRTWLPATGVPFTSGL. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00104 569 PANTHER PECTINESTERASE 55 559 - -
Seca5g00104 569 Pfam Plant invertase/pectin methylesterase inhibitor 69 214 IPR006501 GO:0004857
Seca5g00104 569 Pfam Pectinesterase 257 554 IPR000070 GO:0030599|GO:0042545
Seca5g00104 569 FunFam Pectinesterase 250 569 - -
Seca5g00104 569 Gene3D - 249 569 IPR012334 -
Seca5g00104 569 SMART PMEI_2 65 216 IPR006501 GO:0004857
Seca5g00104 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 216 IPR035513 -
Seca5g00104 569 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Seca5g00104 569 SUPERFAMILY Pectin lyase-like 251 568 IPR011050 -
Seca5g00104 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 218 IPR035513 -
Seca5g00104 569 NCBIfam pectinesterase inhibitor domain 45 216 IPR006501 GO:0004857
Seca5g00104 569 CDD PMEI-like_3 72 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00104 Seca-Chr5 2288442 2291033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00104 60 569 Carbohydrate Esterase AT5G51500 60.232 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00104 K01051 - gmx:100807908 875.159