Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00100 ATGGAGGGCATTTCTTGTAAGCACCTTATCACATTCTTTCTCATAACAATTGTTGTTACTAGTTTCACAACACTACACTCTGTTCAAGCCATTGAAAAACCATACCAACAAGCCAACACACTCTTCATTAGAAGTTCTTGTAGTTCCACAACATATCCAAGGCTATGTTATAGCTCCTTAGTGAAGCACGCAGACTCAATCCAAACAAACCGTGTTGTTCTAACAGGCACAGCCCTCAACGTGACTCTTGCATCTGCTAAATCAACCTCAGTTGTTATGTCAACACTTGCAAAAAGCAGAGGATTGAAGCCAAGAGAGATTGCAGCCATGAAGGACTGTGTGGAAGAGCTGAGTGACTCAGTGGATGAACTCAGAAGGTCAATTGCTGAGATGAGTCATCTCAAGACATCCAATTTTGAACTAACAATGAGTGATGTACAAACTTGGGTTAGTGCTGCTTTGACAGATGAAACAACATGCACTGATGGGTTCCAAGAGATAGCAAGTGGTAGTGGTACAAATGGAGACATTAAGACCACTGTGAGAGGAAAAATTGTGCAGGTAGCTCAATTGACTAGCAATGCCTTGGCTTTGATAAATCAGCTAGCCAATTCCCATGCTTAA 624 0.4167 MEGISCKHLITFFLITIVVTSFTTLHSVQAIEKPYQQANTLFIRSSCSSTTYPRLCYSSLVKHADSIQTNRVVLTGTALNVTLASAKSTSVVMSTLAKSRGLKPREIAAMKDCVEELSDSVDELRRSIAEMSHLKTSNFELTMSDVQTWVSAALTDETTCTDGFQEIASGSGTNGDIKTTVRGKIVQVAQLTSNALALINQLANSHA. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00100 207 Pfam Plant invertase/pectin methylesterase inhibitor 42 198 IPR006501 GO:0004857
Seca5g00100 207 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 204 IPR035513 -
Seca5g00100 207 NCBIfam pectinesterase inhibitor domain 7 202 IPR006501 GO:0004857
Seca5g00100 207 SMART PMEI_2 38 198 IPR006501 GO:0004857
Seca5g00100 207 CDD PMEI-like_3 45 204 - -
Seca5g00100 207 FunFam Pectinesterase inhibitor 3 38 203 - -
Seca5g00100 207 Coils Coil 107 134 - -
Seca5g00100 207 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 202 IPR035513 -
Seca5g00100 207 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00100 Seca-Chr5 2176089 2176712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00100 9 199 Carbohydrate Esterase AT5G53370 30.612 6.41e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00100 - - gmx:100305537 295.819