Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00099 ATGGATAATGGCAATACTTGTGCATTAAACGTGCAGGTGCAGGCTCTCACAATTCTAATCTTCATCCTTCTATCAATTGCTGCAGCTTGCGACGACAACAGTACTAATCATCATCCCCAAAACAGTACCACCCAAAGCTATGTAAACTACATCAAAAACGCATGTCGTTCAACCACATACCCTTCCATATGCTACAAATCTCTGTATCCCTATGCATTGAAAATTGAAGCTGATCCCCTGAAGCTCTGCAATACTTCTCTGTCTCTCGCCTTAAAGGCAGCTTATAGAGCATCCACGACGATATCAAAGCTTTTGGAGAACAACAATTTGGCACACACAACAGAACTAGTGGTTGAAGACTGCATTGACAATCTCAAGGAGTCCATTGGGGAATTGAGGGATTCTCTTGTTGCAATGCAACATTTGGATAGTGATAGAGAGTTTCAAATGAGCAACATCAAGACTTGGGTGAGTGCTGCTATCACTGATGATCAAACATGCTCTGATGGGTTTGATGGGTTTGACAATGTTATGGATGTCAATGTGAGGGATAAGATTAGAAAGAATGTTTTCAAAGTGGGAAAGATGACTAGCAATGCTTTGTATTTCATTAACAATCTCACCTACTAA 630 0.4063 MDNGNTCALNVQVQALTILIFILLSIAAACDDNSTNHHPQNSTTQSYVNYIKNACRSTTYPSICYKSLYPYALKIEADPLKLCNTSLSLALKAAYRASTTISKLLENNNLAHTTELVVEDCIDNLKESIGELRDSLVAMQHLDSDREFQMSNIKTWVSAAITDDQTCSDGFDGFDNVMDVNVRDKIRKNVFKVGKMTSNALYFINNLTY. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00099 209 CDD PMEI-like_3 54 208 - -
Seca5g00099 209 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 208 IPR035513 -
Seca5g00099 209 SMART PMEI_2 46 203 IPR006501 GO:0004857
Seca5g00099 209 NCBIfam pectinesterase inhibitor domain 21 208 IPR006501 GO:0004857
Seca5g00099 209 PANTHER PECTINESTERASE INHIBITOR-LIKE 18 201 - -
Seca5g00099 209 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 207 IPR035513 -
Seca5g00099 209 FunFam Pectinesterase 47 208 - -
Seca5g00099 209 Pfam Plant invertase/pectin methylesterase inhibitor 50 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00099 Seca-Chr5 2161765 2162394 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00099 24 208 Carbohydrate Esterase AT1G53830 28.421 2.53e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00099 - - gmx:100527443 222.246