LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g00099	ATGGATAATGGCAATACTTGTGCATTAAACGTGCAGGTGCAGGCTCTCACAATTCTAATCTTCATCCTTCTATCAATTGCTGCAGCTTGCGACGACAACAGTACTAATCATCATCCCCAAAACAGTACCACCCAAAGCTATGTAAACTACATCAAAAACGCATGTCGTTCAACCACATACCCTTCCATATGCTACAAATCTCTGTATCCCTATGCATTGAAAATTGAAGCTGATCCCCTGAAGCTCTGCAATACTTCTCTGTCTCTCGCCTTAAAGGCAGCTTATAGAGCATCCACGACGATATCAAAGCTTTTGGAGAACAACAATTTGGCACACACAACAGAACTAGTGGTTGAAGACTGCATTGACAATCTCAAGGAGTCCATTGGGGAATTGAGGGATTCTCTTGTTGCAATGCAACATTTGGATAGTGATAGAGAGTTTCAAATGAGCAACATCAAGACTTGGGTGAGTGCTGCTATCACTGATGATCAAACATGCTCTGATGGGTTTGATGGGTTTGACAATGTTATGGATGTCAATGTGAGGGATAAGATTAGAAAGAATGTTTTCAAAGTGGGAAAGATGACTAGCAATGCTTTGTATTTCATTAACAATCTCACCTACTAA	630	0.4063	MDNGNTCALNVQVQALTILIFILLSIAAACDDNSTNHHPQNSTTQSYVNYIKNACRSTTYPSICYKSLYPYALKIEADPLKLCNTSLSLALKAAYRASTTISKLLENNNLAHTTELVVEDCIDNLKESIGELRDSLVAMQHLDSDREFQMSNIKTWVSAAITDDQTCSDGFDGFDNVMDVNVRDKIRKNVFKVGKMTSNALYFINNLTY.	210

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g00099	209	CDD	PMEI-like_3	54	208	-	-
	Seca5g00099	209	Gene3D	Invertase/pectin methylesterase inhibitor family protein	47	208	IPR035513	-
	Seca5g00099	209	SMART	PMEI_2	46	203	IPR006501	GO:0004857
	Seca5g00099	209	NCBIfam	pectinesterase inhibitor domain	21	208	IPR006501	GO:0004857
	Seca5g00099	209	PANTHER	PECTINESTERASE INHIBITOR-LIKE	18	201	-	-
	Seca5g00099	209	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	49	207	IPR035513	-
	Seca5g00099	209	FunFam	Pectinesterase	47	208	-	-
	Seca5g00099	209	Pfam	Plant invertase/pectin methylesterase inhibitor	50	201	IPR006501	GO:0004857

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g00099	Seca-Chr5	2161765	2162394	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g00099	24	208	Carbohydrate Esterase	AT1G53830	28.421	2.53e-13	66.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g00099	-		-	gmx:100527443	222.246

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