Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00096 ATGGCACTGCACACTCTTTTTGGAAGTTCAATGTCTTGCCATAGTCTCTTCAGAGTACTTCTTTCCCTTCTTTTCATCTCAACCTTTCTTCACTCAGCATCTGCATGCAACTCCACAAACACCACCAATTCCCAGCTCAAAGCCTATAAAAAGTTTATATTCAATCAGTGCAATTCAACCACTTACCCAAAAGTTTGCTACAAGTCTCTGACCCCTTATGCATCAAAAATCAAAACAAACCGTTCAACACTCACCAGAACCTCTGTTTATCTGGCTCTAAAAGCAGCCAGAAGTTCATCTAAGACATTAACAAAGCTATCCAGTTCCAAGAACCTAACACATCCAGAAACATTGGTCATTGCTGACTGCAAAGAGAATATTGATGACACTGTGGATCTACTTGAGCAATCTGTTGATGGCATTATACGTTTGAATGGTACCACTACTGATGATGAGAAATTTCAATGGGATAACATAAAGACATGGATGAGTGCTGCCATAACAGATGAGACTACATGCACAGATGAGTTTGATGAAATGGAAGTGGGGGCTTCCCTGCAGAAGAAGATCAAAACCAGTGTTGGCAATCTTGCTTGGCTGACTAGCAATGCCCTGGCTTTGGTAAACAGGCTTACATTCTAA 642 0.4097 MALHTLFGSSMSCHSLFRVLLSLLFISTFLHSASACNSTNTTNSQLKAYKKFIFNQCNSTTYPKVCYKSLTPYASKIKTNRSTLTRTSVYLALKAARSSSKTLTKLSSSKNLTHPETLVIADCKENIDDTVDLLEQSVDGIIRLNGTTTDDEKFQWDNIKTWMSAAITDETTCTDEFDEMEVGASLQKKIKTSVGNLAWLTSNALALVNRLTF. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00096 213 NCBIfam pectinesterase inhibitor domain 17 211 IPR006501 GO:0004857
Seca5g00096 213 CDD PMEI-like_3 57 212 - -
Seca5g00096 213 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 211 IPR035513 -
Seca5g00096 213 SMART PMEI_2 48 207 IPR006501 GO:0004857
Seca5g00096 213 Pfam Plant invertase/pectin methylesterase inhibitor 52 207 IPR006501 GO:0004857
Seca5g00096 213 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 212 IPR035513 -
Seca5g00096 213 PANTHER PECTINESTERASE INHIBITOR-LIKE 22 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00096 Seca-Chr5 2103078 2103719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00096 57 212 Carbohydrate Esterase AT1G53830 28.662 6.13e-14 68.2