Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00092 ATGTCGTCAACCCCTCCACCGCCACGTTTTCCAAAGGTCGATCTCGCATCAGGGTCTTCGTCGCCGTTCTCCGCAAGATCTAAACAGCTCCAAAAAATTCCCCCAATCCAAAATCGACAGACCGCAACATTAGCCGATGAAGAGGAGGAGCAGGAACAGGAGGAAGAGGAAGGTGAAGGTGCCAATTCTTCTTCCATCTTGCTTGCATCGTCTTTGGGGCTCAACCATATTCGAACGCGCTCCTCATCTTCGCCTCTTCGCTATTCTTCCTCGGTTGGCGCCCCTTCCTTCTTGACAAAGGATGTTGTCACTATTAATGTCGCCAAAACTAGATCCAAACCTTCACATCCAAAAGACCTAGGGGAGAAAGCTCATTGGAGTCAATCCAAATCGATGAAAGCTCATTCACAACTCCTTCCTGTGCTTGAGGGTAATCATGCAGCTTTTGCCAAAGAAATGCAATCCCCACGGTTTCAGGAAATACTACGACTCACAAGTGGACGTAAAAAAACACACCATGATATTAAAAGTTTTTCCCATGAACTTAACTCCAAAGGAGTTAGACCTTTTCCAATATGGAAACATCGCGCCCTTGGCCATTTAGAGGAAGTCATGGTGGCAGTTCGAGCTAAGTTTGAAAAATTAAAGGAAGAAGTTGATTCTGACTTAGGTGCTTTTGCTGGAGATTTGGTGGGCACACTTGAAAAAATTTCAGGGTCTCAAATTGAATGGACAGAAAGGTTGGAGGATCTGTTGATTGTTGCTCGACAATGCACAAAGATGTCACCTGCTGAGTTTTGGGTTAAATGTGAAGCTATTGTTCAAAATCTTGATGACAAGCGCCAAGAATTACCAGTGGGGATCCTCAAGCAAGCTCATACACGTCTATTATTTATTCTCACTCGGTGCACTCGTCTAGTTCAATTCCAAAAGGAAAGTGGCTATGAACAAGAGCATATTCTGGGTCTTCACCAACTCAGTGATCTTGGAGTATATCCAGAACAAATTTTGAAAGCTGCGGAACAGGCAGAGCAAAAATCCAGTATTCCACCTAGTCAGCATGAGATGGCTGAGAAGCTGTTGAAAAAGTCACTTGGAAAAGGACAAGACAAATTGATAACAAAACAAAATCAAGTGGACCACCATGTCGGTGTTGCAATTGACAATTTGGAAGTTTCTACAGCTAAAAGTGGTGAATCAACTCCTAGTAGCTATAGGATGTCTTCTTGGAGAAAGCTTCCATCTGCCGCTGAGAAAAAACGCCTTGAAATGGATCAGTTGGTAGTCAAAGATGAAAATATTGAAAATATGGATACTTTGTCATGCCAGCCTGAACATTCACAGTCATCATCCAGAGCGCGAAAGGTTTCCTGGGGATTCTGGGGAGATCATCAAAATGTATCATATGAGGATTCAATGATCTGTAGGATTTGTGAGGTTGAAATACCAATCGTGCATGTGGAGGAGCATTCTCGAATATGCACAATAGCTGATAGATGTGATTTAAAAGGCTTAAATGTTAATGAACGACTTGAAAGAGTTTGTGAAACTATTGAAAGGATATTGGATTCATGGACACCCAAAAGCACACCCAAAAGCATTGATGCCCCTGGAGAAAGCTTCGAGGTTGTTAGAGTGTCAACTTCAAGTATGCATGAAGAGTTCAATGAGCTATCTCTAGAAAGACATAACTTGTCTCGTAGATGCTCTGATGAAATGCTTGAAGCTGAAAATACTTTTGTTATGGATGATCTGAACCTTTCACATGAAATATCATGTGAAGCACGCATGTGTTTAAAATCCGATCATGGCACAAAAGTATCTTCAGCTGGAAGCTTGACGCCGAGATCACCGTTGGTAACACCACGAACTAGTCAAGTAGAAATGTTACTAAATGGAAGAAGAATAATATCTGAACTTGAGAGTTATGACCAGATAAATAAACTAGTTGAAATAGCTCGTGCCGTTGCAAATGTGAACAATTGTGACTACAGTGCATTGGAGTATATGCTTGATCGTTTGGAAGACCTGAAATACGCAATTCAAGACAGAAAAGTGGATGCACTTATACTGGAGACTTTTGGTCGACGAATAGAGAATCTTTTACAGGAGAAATATATATCTCTTTGTGGGCAGATAGATGATGAAAAGGTAGACTCATTGAACAGCATGGCTGATGAAGAGAGTTCAGTGGAAGATGATACAGTTCGTAGCCTTCGTGCTAGCCCAATTAACACTTGTTCTAAGGACCGAACCTCTATTGAAGACTTTGAAATAATAAAACCAATAAGTAGGGGTGCATTTGGACGAGTTTTTCTTGCCCGAAAAAGAGCGACTGGTGATTTATTTGCTATAAAGGTTTTGAAAAAGAAAGATATGATCCGTAAAAATGCAGTTCAAAGTATTTTGGCTGAGCGAGACATCCTTATATCTACTCGAAACCCTTTTGTGGTTCGATTTTTCTACTCCTTCACATGTAGGGAAAATCTTTATCTAGTTATGGAGTATTTAAATGGTGGAGATCTTTATTCTTTGTTGAGAAATCTAGGTTGCTTAGAAGAAGATATGGCCCGTGTATATATTGCAGAAGTTGTTCTTGCATTGGAGTATTTACATTCCTTAAATGTGATTCATAGAGACTTGAAGCCAGATAATTTATTGATTGGTCAAGATGGTCACATTAAGTTGACAGATTTTGGGCTCTCTAAGGTTGGTCTTATCAATAGTACAGATGATTTATCAGCGCCATCATTTTCCACTTATGGCTTCCTAGGAGATGATGAACCAAAACCTCAACATTCTTCAAAAAGGGAAGAACGTCGAAAAACATCATTGGTTGGCACCCCAGATTATTTGGCACCTGAAATACTTCTTGGAATGGGACATGGTGCAACTGCAGATTGGTGGTCTGTGGGTGTCATACTTTATGAGCTGCTTGTGGGTATTCCACCATTCAATGCAGCACATCCACAGCAAATTTTTGATAACATAATTAATAGAGACATACAATGGCCCAACATTCCAGAGGAGATCAGCTATGAAGCATATGATTTGATGAATAAATTATTGAATGAAAATCCAGTCCAGAGATTAGGTGCAACAGGAGCTACGGAAGTGAGTTATTTATTGGTTAAACGCCACGCTTTCTTTAAGGATATTAATTGGGATACTCTAGCAAGGCAGAAGGCTATGTTCATACCATCAGCTGAAGCTCTTGATACAAGTTATTTTATGAGTCGTTACATTTGGAATCCAGAGGATGAACATTGTGCTGGAGGTAGTGATTTTGATGACATTACTGAAACTTGCAGTAGTGGTTCTGGCAGCAATTTAATAGATGAAGATGGTGATGAATGTCGCAGTTTAGCAGACTTCAGTGGTCCAGCTCTTGAGGTGCAATACTCATTTAGTAATTTTTCATTCAAGAACTTGTCACAACTAGCATCTATCAATTATGATTTGGTGATTAAGAACTCCAAGGAATCACTCGATGACTCCAACCCTTCTGTTTCATGA 3516 0.4036 MSSTPPPPRFPKVDLASGSSSPFSARSKQLQKIPPIQNRQTATLADEEEEQEQEEEEGEGANSSSILLASSLGLNHIRTRSSSSPLRYSSSVGAPSFLTKDVVTINVAKTRSKPSHPKDLGEKAHWSQSKSMKAHSQLLPVLEGNHAAFAKEMQSPRFQEILRLTSGRKKTHHDIKSFSHELNSKGVRPFPIWKHRALGHLEEVMVAVRAKFEKLKEEVDSDLGAFAGDLVGTLEKISGSQIEWTERLEDLLIVARQCTKMSPAEFWVKCEAIVQNLDDKRQELPVGILKQAHTRLLFILTRCTRLVQFQKESGYEQEHILGLHQLSDLGVYPEQILKAAEQAEQKSSIPPSQHEMAEKLLKKSLGKGQDKLITKQNQVDHHVGVAIDNLEVSTAKSGESTPSSYRMSSWRKLPSAAEKKRLEMDQLVVKDENIENMDTLSCQPEHSQSSSRARKVSWGFWGDHQNVSYEDSMICRICEVEIPIVHVEEHSRICTIADRCDLKGLNVNERLERVCETIERILDSWTPKSTPKSIDAPGESFEVVRVSTSSMHEEFNELSLERHNLSRRCSDEMLEAENTFVMDDLNLSHEISCEARMCLKSDHGTKVSSAGSLTPRSPLVTPRTSQVEMLLNGRRIISELESYDQINKLVEIARAVANVNNCDYSALEYMLDRLEDLKYAIQDRKVDALILETFGRRIENLLQEKYISLCGQIDDEKVDSLNSMADEESSVEDDTVRSLRASPINTCSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKVLKKKDMIRKNAVQSILAERDILISTRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLEEDMARVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSFSTYGFLGDDEPKPQHSSKREERRKTSLVGTPDYLAPEILLGMGHGATADWWSVGVILYELLVGIPPFNAAHPQQIFDNIINRDIQWPNIPEEISYEAYDLMNKLLNENPVQRLGATGATEVSYLLVKRHAFFKDINWDTLARQKAMFIPSAEALDTSYFMSRYIWNPEDEHCAGGSDFDDITETCSSGSGSNLIDEDGDECRSLADFSGPALEVQYSFSNFSFKNLSQLASINYDLVIKNSKESLDDSNPSVS. 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00092 1171 SMART serkin_6 757 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00092 1171 MobiDBLite consensus disorder prediction 929 944 - -
Seca5g00092 1171 Coils Coil 198 218 - -
Seca5g00092 1171 MobiDBLite consensus disorder prediction 922 944 - -
Seca5g00092 1171 FunFam probable serine/threonine protein kinase IREH1 755 844 - -
Seca5g00092 1171 MobiDBLite consensus disorder prediction 17 42 - -
Seca5g00092 1171 Gene3D Transferase(Phosphotransferase) domain 1 841 1068 - -
Seca5g00092 1171 SUPERFAMILY Protein kinase-like (PK-like) 754 1077 IPR011009 -
Seca5g00092 1171 MobiDBLite consensus disorder prediction 1 64 - -
Seca5g00092 1171 Gene3D Phosphorylase Kinase; domain 1 755 1077 - -
Seca5g00092 1171 Pfam Protein kinase domain 757 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00092 1171 ProSiteProfiles Protein kinase domain profile. 757 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00092 1171 PANTHER SERINE/THREONINE-PROTEIN KINASE 451 1125 - -
Seca5g00092 1171 FunFam Probable serine/threonine-protein kinase cot-1 840 1071 - -
Seca5g00092 1171 ProSiteProfiles AGC-kinase C-terminal domain profile. 1051 1151 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca5g00092 1171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 876 888 IPR008271 GO:0004672|GO:0006468
Seca5g00092 1171 CDD STKc_MAST_like 763 1055 - -
Seca5g00092 1171 Coils Coil 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00092 Seca-Chr5 2066634 2079181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00092 1 1170 AGC Kinase Gene Family AT5G62310 63.554 0.0 1482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Seca5g00092 Pkinase 6.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00092 - - gmx:100817975 1855.11