Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00078 ATGGGTTCTTCTAATGGTGGTGTGCCTCCGGGATTTAGATTTCATCCCACGGATGAAGAATTGCTTCATTACTACTTGAAGAAGAAGGTGTCCTTTCAGAAATTTGATATGGATGTTATTAGAGAAGTTGACTTGAACAAGATGGAGCCTTGGGACTTGCAAGAGAGATGTAGAATTGGATCAACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGACAGGAAGTACCCAACAGGGTCAAGGACTAATAGAGCAACAAATGCAGGGTTTTGGAAAGCAACGGGGAGAGACAAGTGTATTAGGAACAGCTATAAGAAGATTGGAATGAGAAAAACCCTTGTCTTCTACAAAGGCAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTACCGCCTCGAAGATGGCAATGATCCTCAAGCAAATGCCAATGAAGATGGTTGGGTGGTATGCAGGGTGTTCAAGAAGAAGAACCTATTTAAGATTGGAAATGAAGGTGGCTCCACACACAATCCAGATCAACAAATCAACAACTCCTCAGGCACTAATGCTCGCTCCTTCATGCACAGAGAAAACCAATACTTGCTGCATCAACAACAAAACCCTAGGAACCCGTCAGGGTTTGAGCTTGATAAGCCTGAGCTTGCTCTGCATTACCCACATTTGCAAAACCCTCAATACTCACTCTTCCAATCCCAACCCCTTCTTCAAACCCACAAACCGTTGGTTTATGACTACTCATATGCTTCATCTCTGCCCTCTGAGCCCCCTGTCACGGCAAAGCAGCTCATGACAAACCCTAGAGACTGTGAAAGTGGTAGTGATGGTCTGAGATACCAAGTTTCGGAATCTGGCATGGAAGTTGGTTCATGTGAACCACCTCAAGAAATGGGTGGTGGAAGAGGTGAAGGAATGAACGAATGGGGCGTGCTTGATAGGCTAGTGACCTCTCATCTTGGAAATGAAGACTCAACCAAAGGGGTCAGGTTTGATGATTCAAATACACAGTCTGTTCATCAAATCAACCAACTTTCATTGCGAGGAGAGATGGACTTTTGGGCTTATGGAAAACAATGA 1086 0.4438 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPQANANEDGWVVCRVFKKKNLFKIGNEGGSTHNPDQQINNSSGTNARSFMHRENQYLLHQQQNPRNPSGFELDKPELALHYPHLQNPQYSLFQSQPLLQTHKPLVYDYSYASSLPSEPPVTAKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPPQEMGGGRGEGMNEWGVLDRLVTSHLGNEDSTKGVRFDDSNTQSVHQINQLSLRGEMDFWAYGKQ. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00078 361 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Seca5g00078 361 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Seca5g00078 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 214 - -
Seca5g00078 361 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Seca5g00078 361 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Seca5g00078 361 FunFam NAC domain-containing protein 17 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00078 Seca-Chr5 1805809 1809160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00078 1 355 NAC Transcription Factor Family AT1G33280 57.778 1.36e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca5g00078 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00078 - - gmx:100804181 672.159