Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00077 ATGGGAAATTTTCGTAGACAAAATATTCCCCAAAGAATAAGGGTTCAACTGGGTCCTGATACAGCTACTGGTGCTGCAAGAACTGATGCTCTCTTGAATGGTCTAGAGATTTTCAAGCTTAGTCGAAATGGTAATCTTGCCTATGTGGAAACATATAACTCAGCTGACAATTCAGTAAGCAAATCAAAAGCAAAAATTTGGGTTGGAATTGGAGCAGGTCTAGCTTCTGTAGCTGTAATTGCATGTATAGTTGTTCTTGTTTTCTGTTTCTGCATAAGGAGGAAGAAAGAATCAAGTGATACCAAAAACAACTCTCCAGGTTGGCGACCATTGTTCCTGTATGGAGGGGCTGCTGTAAACAATACCGTTGGTGCCAAGGGATCAGCAGGCACTCAGAAGTTATATGGATATGTGGCTTCAACCAGAGTTGGCAAGCGGTTTACATTGGCAGAAATTACTGCTGCAACAAATAACTTTGATGACAGTTTGGTAATTGGAGTTGGAGGCTTTGGTAAGCTGTATAAGGGGGAGATTGAGGATGGTGTCCCTGCTGCAATTAAGCGTGCCAACCCGCAATCTGAGCAAGGTCTGGCTGAATTTGAAACAGAAATTGAGATGCTCTCCAAACTTAGACATAGGCATCTGAAGCAGCGCCTAGAAGCATGCATTGGTGCTGCAAGAGGACTTCACTACCTTCACACAGGAGCTGAACGTGGAATAATTCACAGGGATGTCAAAACAACCAATATACTGTTAGATGAGAATTTTGTACCCAAAATGTATGATTTTGGGTTGTCAAAAGATGGTCCTGCATTTGACCATACTCATGTTAGTACTGTTGTGAAAGGAAGTACTTATATATCTTTCAAAATGGACAGATGGTGTAACCGCAATTATAAGAAAGTGGGAAGGGTCTAG 918 0.4172 MGNFRRQNIPQRIRVQLGPDTATGAARTDALLNGLEIFKLSRNGNLAYVETYNSADNSVSKSKAKIWVGIGAGLASVAVIACIVVLVFCFCIRRKKESSDTKNNSPGWRPLFLYGGAAVNNTVGAKGSAGTQKLYGYVASTRVGKRFTLAEITAATNNFDDSLVIGVGGFGKLYKGEIEDGVPAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLKQRLEACIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVPKMYDFGLSKDGPAFDHTHVSTVVKGSTYISFKMDRWCNRNYKKVGRV. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00077 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Seca5g00077 305 Gene3D Phosphorylase Kinase; domain 1 123 224 - -
Seca5g00077 305 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 215 286 - -
Seca5g00077 305 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524
Seca5g00077 305 ProSiteProfiles Protein kinase domain profile. 159 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00077 305 Gene3D Transferase(Phosphotransferase) domain 1 226 276 - -
Seca5g00077 305 FunFam receptor-like protein kinase FERONIA 125 226 - -
Seca5g00077 305 SUPERFAMILY Protein kinase-like (PK-like) 137 294 IPR011009 -
Seca5g00077 305 Pfam Protein kinase domain 226 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00077 305 SMART tyrkin_6 159 302 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00077 Seca-Chr5 1797485 1798854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00077 15 284 Receptor kinase-like Gene Family AT1G30570 57.419 3.52e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca5g00077 Pkinase 6.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00077 - - gmx:100791403 445.277