Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00064 ATGACTCCAGTTAATTTGGCAGGGCAGTTTGGTGACACCACATACACGAAGGTGTTTGTTGGAGGATTGGCTTGGGAGACACAAAAGGAAACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTCCGCGAACCAGAAGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTGTCATCGATGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGAGTTCAGAGATCTAAGCCTTCAACACCAAAGCATGGAGGAGGAGGAGCGAGGAACTTTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCGGCTTTTCCTTCAGCAACAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCTTACTCGCCAGATTACACATACCCTACGGTTTGTACCTATTTTACTTTTGCTTTTTCTTTCTCATCTGCTATTAATATCTTTTACTTAGGATCCGTTTCCAAGTATAACTTTTAG 576 0.4375 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGARNFRVMGSFQTGFGGVGSAFPSATTFPHYAIQQGIPYNVYGYSSYSPDYTYPTVCTYFTFAFSFSSAINIFYLGSVSKYNF. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00064 191 SUPERFAMILY RNA-binding domain, RBD 12 114 IPR035979 GO:0003676
Seca5g00064 191 SMART rrm1_1 17 89 IPR000504 GO:0003723
Seca5g00064 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Seca5g00064 191 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Seca5g00064 191 Gene3D - 6 112 IPR012677 -
Seca5g00064 191 PANTHER BOULE-RELATED 6 158 - -
Seca5g00064 191 CDD RRM_RBM24_RBM38_like 16 91 - -
Seca5g00064 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00064 Seca-Chr5 1337491 1341319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00064 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 3.67e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00064 - - vum:124847527 327.405