Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00062 ATGGCCAAGAGTCCCCATCTCTTTCACTTTTTCCAGTTCTTGGCAGTGCTGTTACTCACTTCATACTCTATTTTCCCACCTTGTGTGTCTCTAGCATTGGAAGCCCAGGCTCTTCTTCAGTTCAAGAACCATTTGAAGGACCCCTTTAATTCTTTGGCTTCATGGAATGAATTAGGCTCACCATGTGAGTTTTATGGACTTACATGTGATCCAGCTTCTGGGAAAGTCACAGAAATCTCACTTGAGAATATGTCCCTCTCTGGTGACATTTTCCCATCACTCTCAGTTCTTCAGAGCCTGCAGGTTCTGTCACTACCATCCAATTTAATTTCTGGTAAGCTTCCATCAGAAATAAGTAGCTGCACCAACCTCAGAGTCTTGAATCTAACAGGGAATCAGCTGGTTGGATCAATCCCAGACTTGTCTATGCTGAGAAACCTGCAGGTTCTTGATCTTTCAGCAAACTACTTCTCTGGAAGAATCCCCAGTTGGGTGGGGAATCTAACTGGACTAGTTTCATTGGGTCTTGGGGAAAATGCATACACTGAGGGTGAGATTCCAGAGACTCTTGGAAATCTGAAGAACTTGACCTGGCTCTATCTTGGTGGCTCCCATTTGATAGGAGACATTCCAGAATCAATATATGAAATGAAGGCATTGGAGACACTGGACATTTCAAGAAACAAGATCTCTGGCAAACTCTCCAGATCAATTTCCAAGTTAAAGAATCTTTACAAGATTGAGCTCTTCTCAAATAATTTGACAGGAGAAGTCCCAGCTGAGCTAGCAAACCTCACCAAGCTGCAGGAGATTGACCTTTCTGCAAACAATATGTATGGTAGGTTGCCAGAGGAAATTGGCAATATGAAGAACTTGGTTGTTTTTCAACTATATGAAAACAGCTTTTCTGGAGAACTTCCTGCTGGATTTGGAGATATGCAACATCTCAATGGATTCTCAATATATAGAAACAACTTCACTGGGAGAATTCCAGAAAATTTTGGCCGATTTTCACCACTTGAAAGTATTGACATATCTGAGAATCAATTTTCAGGTGATTTCCCAAAGTTCTTGTGTGAAAGCAGGAAGTTGAGATTTTTGCTTGCATTGCAAAACAATTTTTCTGGGAGTTTTCCTGAGTCTTATGGTACATGCAAATCTCTAGAGAGATTTAGGATCAGTGGAAACCACTTATCTGGGAAAATTCCAGACAAGGTTTGGGCACTTCCATATGTAAAAATAATTGATTTTGGTTACAATGATTTCACTGGTGAGGTTTCTTCAGAAATTGGGTTTTCTACTAGCTTAAGTCAGATAGTTTTGATAAACAACAGGTTTTCAGGTAAGCTCCCATCAGAAATTGGCAAGCTGGTGAACTTGGAGAAGTTTTACTTGAACAACAATAATTTCTCTGGTGAAATACCACCTGAAATGGGATCTTTGAAGCAGCTATCCACTTTGCATCTAGAAGAGAATTCATTAACTGGATCAATACCCACAGAACTGGGTCATTGTGCAAGGCTGGTGGACTTGAACCTTGCTTGGAATTCTCTATCTGGAAATATCCCCCAGTCAGTTTCACTTATGAGCTCATTGAACTCTCTTAATATATCTGGAAACAAACTTACAGGTTCTATTCCAGATAATTTAGAGATAATGAAACTAAGCTCAGTGGATTTTTCTGAAAACCTTCTTTCTGGAAGAATTCCATCTGGTCTTTTTATTATTGGTGGAGAGAAAGCTTTTCTTGGAAACAAGGGACTGTGTGTTGAGGAAAACCTAAGACCTTTCATGAATTCTGATTTGAAGTTTTGTGGAAAAAATCATGGTCAGACAAGGGTCTTTGCTTATAAATTTGTCCTGCTCTTTTTCACTGCTTCTGTCTTTGTTGTTATTTTAGCTGGGTTGCTGTTTTTGAGTTGTAGAAGCCTCAAACATGGTGCTGATAAAAACTTAGAAAGTCAAAAGGAAGCGCGTCAAAAATGGAAACTTGCATCTTTCCACCAAGTAGATATTGATGCTGATGAAATATGTAATTTGGATGAAGATAATTTAATAGGAAGTGGTGGTACAGGAAAGGTTTATAGAGTGGAATTGAGGAAAAATGGTGGCACAGTGGCTGTAAAGCAACTGCAGAAAGGAGATGGTGTGAAGATTTTAGCTGCAGAGATGGATATTTTGGGGCAGATTAGGCATAGAAACATACTTAAACTTTATGCTTGTTTACTTAAAGGAGGTTCAAACCTTTTAGTGTTTGAGTACATGCCAAATGGTAATCTTTTTCAAGCTCTTCATAGAGAGAAAAAAGATGGGAAGCCAGAATTGGATTGGAACAAAAGGTATAAAATTGCTCTAGGAGCTGCAAAAGGAATTGCCTATTTACACCATGACTGTTCTCCACCAATAATTCACAGGGATATAAAATCCAGCAACATTTTGCTTGATGAGGATTATGAGCCAAAGATTGCTGATTTTGGTATTGCAAGGTTTGCAGAAAAATCTGATAAGCAGCTGAGTTATAGCTGTCTTGCCGGCACACATGGTTATATTGCTCCAGAACTTGCTTATACAATTGACATTACTGAAAGGAGTGATGTCTATAGCTTTGGAGTGGTGCTATTAGAATTAGTGTCTGGAAGAGAACCCGTTGAAGAGGATTATGGAGAAGCAAAGGATATTGTTTATTGGGTTTCTACACATCTGAATGACCGTGAAAGTATTGTCAACATTCTTGATGATAGAGTTGCATTGGAGTATGCTGAAGATATGATAAAAGTGTTGAAGATAGCTATTAAGTGCACCACTAAGCTTCCATCTTTACGCCCTACCATGAGAGAGGTTGTCAAGATGCTTATTGGTGCTGAACCTTGCACATTGAAATCTCATTACTGCGATCTTGACAATGATGCCAAGGATTTTCTCTAG 2925 0.3915 MAKSPHLFHFFQFLAVLLLTSYSIFPPCVSLALEAQALLQFKNHLKDPFNSLASWNELGSPCEFYGLTCDPASGKVTEISLENMSLSGDIFPSLSVLQSLQVLSLPSNLISGKLPSEISSCTNLRVLNLTGNQLVGSIPDLSMLRNLQVLDLSANYFSGRIPSWVGNLTGLVSLGLGENAYTEGEIPETLGNLKNLTWLYLGGSHLIGDIPESIYEMKALETLDISRNKISGKLSRSISKLKNLYKIELFSNNLTGEVPAELANLTKLQEIDLSANNMYGRLPEEIGNMKNLVVFQLYENSFSGELPAGFGDMQHLNGFSIYRNNFTGRIPENFGRFSPLESIDISENQFSGDFPKFLCESRKLRFLLALQNNFSGSFPESYGTCKSLERFRISGNHLSGKIPDKVWALPYVKIIDFGYNDFTGEVSSEIGFSTSLSQIVLINNRFSGKLPSEIGKLVNLEKFYLNNNNFSGEIPPEMGSLKQLSTLHLEENSLTGSIPTELGHCARLVDLNLAWNSLSGNIPQSVSLMSSLNSLNISGNKLTGSIPDNLEIMKLSSVDFSENLLSGRIPSGLFIIGGEKAFLGNKGLCVEENLRPFMNSDLKFCGKNHGQTRVFAYKFVLLFFTASVFVVILAGLLFLSCRSLKHGADKNLESQKEARQKWKLASFHQVDIDADEICNLDEDNLIGSGGTGKVYRVELRKNGGTVAVKQLQKGDGVKILAAEMDILGQIRHRNILKLYACLLKGGSNLLVFEYMPNGNLFQALHREKKDGKPELDWNKRYKIALGAAKGIAYLHHDCSPPIIHRDIKSSNILLDEDYEPKIADFGIARFAEKSDKQLSYSCLAGTHGYIAPELAYTIDITERSDVYSFGVVLLELVSGREPVEEDYGEAKDIVYWVSTHLNDRESIVNILDDRVALEYAEDMIKVLKIAIKCTTKLPSLRPTMREVVKMLIGAEPCTLKSHYCDLDNDAKDFL. 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00062 974 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Seca5g00062 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Seca5g00062 974 Gene3D Ribonuclease Inhibitor 316 596 IPR032675 -
Seca5g00062 974 SMART serkin_6 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00062 974 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Seca5g00062 974 ProSiteProfiles Protein kinase domain profile. 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00062 974 Gene3D Ribonuclease Inhibitor 31 183 IPR032675 -
Seca5g00062 974 Gene3D Phosphorylase Kinase; domain 1 644 754 - -
Seca5g00062 974 FunFam Leucine-rich repeat receptor protein kinase EMS1 210 294 - -
Seca5g00062 974 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Seca5g00062 974 Gene3D Ribonuclease Inhibitor 184 242 IPR032675 -
Seca5g00062 974 Gene3D Ribonuclease Inhibitor 243 315 IPR032675 -
Seca5g00062 974 SUPERFAMILY Protein kinase-like (PK-like) 677 951 IPR011009 -
Seca5g00062 974 FunFam leucine-rich repeat receptor-like protein kinase TDR 755 962 - -
Seca5g00062 974 FunFam Receptor-like protein kinase HSL1 295 597 - -
Seca5g00062 974 Pfam Leucine rich repeat 145 206 IPR001611 GO:0005515
Seca5g00062 974 Pfam Protein kinase domain 682 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00062 974 FunFam Probable inactive receptor kinase RLK902 31 189 - -
Seca5g00062 974 Gene3D Transferase(Phosphotransferase) domain 1 755 963 - -
Seca5g00062 974 SUPERFAMILY L domain-like 60 397 - -
Seca5g00062 974 CDD STKc_IRAK 686 951 - -
Seca5g00062 974 SMART LRR_typ_2 457 480 IPR003591 -
Seca5g00062 974 SMART LRR_typ_2 481 505 IPR003591 -
Seca5g00062 974 SMART LRR_typ_2 144 168 IPR003591 -
Seca5g00062 974 SMART LRR_typ_2 529 553 IPR003591 -
Seca5g00062 974 SMART LRR_typ_2 265 289 IPR003591 -
Seca5g00062 974 SMART LRR_typ_2 217 241 IPR003591 -
Seca5g00062 974 SMART LRR_typ_2 97 121 IPR003591 -
Seca5g00062 974 SUPERFAMILY L domain-like 355 573 - -
Seca5g00062 974 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515
Seca5g00062 974 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Seca5g00062 974 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 217 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00062 Seca-Chr5 1297659 1301182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00062 1 962 Receptor kinase-like Gene Family AT1G72180 56.893 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca5g00062 Pkinase 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00062 - - gmx:100789704 1622.45