Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00061 ATGGCTTTTCTCCTTAACCCCTCCTTCTGCTACCTCTTTATTATTTCCTTGTACTTCCTTTCTTCTCTTCCAATCATAAATACACTTTCAACTGTTACCATTTCTGAAACTTCCAACCAAACATTTATTTGTGCCTTACAACACCCAAACCAACAAGGACAGTCAAATCTTAACTGTACTAGCTTCCCTCCTGGTGCTATTGGACTTCAAATAAATCCCAATGTTTCCTACTCTGAGATTGTGGGTGGCAATGGTTTTCTCTGTGCATTAAGGCCACCATCTTCTTCTTCTTCCATCATGGGGTGTTGGAGATTCTCTGCTAATGCTACTAATGTTCCCTTTAAACGTATCTACCGTGGACCTGTTATTGAAGATATTGAAGGTGGGAACTCCCATGTTTGTGGTCTTGTTAGAGGGAACGATGGCCTTGATCTTGGGTGTTGGCAATGGTATGGCTTCAATTCAAGCATGGCCAGGAACATGTCAAGCATTGCAGTGGGAGAGAATTTTGTATGTGGCTTATCAGAAACAGGGAAAGTTACTTGCTTGGGGAGTAACAACAGTAGAGTTGTTGGGCATGAGCCTGGCCATGGTGGAAATTACTCTGTAGTTGCAGCTGGGTTCAGACATGCTTGTGCTATCTCTCTTGATGGTAGCTTGGATTGTTGGGGAGACATGGTGGGTGAGAAACCACAAGGGAGGTTCATTTCTTTGGCGTTGGGAGAGAATAGAAGTTGTGCACTTGGGTATAATGGACTAGTTTCTTGTTGGGGGTCCAATAATTTCACCATGCCACAGAGATTGCAAGGGACTTTTTTTGAGGCAATTGTAGCAAAGAGGAGTGTTTTTTGTGGAGTTGTGTCTTCTAATTATTCTTTGCTTTGTTGGGGTACTGAAATTGTTGAGTCAAATACCAAGGTGTTTGATAATGTCCTCCCAGGACCTTGTAGGAACCAATGTCCATGTGGACCCTTGTCAGATTCTGCCAAACTCTGTAATTCACCAGCCATCATTTGCAAGCCTTGTCCACCAGCAGTTGAACCACCATCAAGTTCTCCACCTCCATCATCACCACCATCAAATTCTCCACCTCCATCACCCCAACCTGCAGCAGAAAGTGGTTGGAGCAACAGAATGGTGGCATTTCTGGTGGTTGGATGTGTTGGTTGCAGTACCTTGTTGCTAGTCTTGGCTTTCTTCCTTTACAAGTACTGTAAAGGCAGAGTATGCCGTGTCCATGACTCTGGAAGATTGGATGATGAACCTAGGAATGAACAAGAAGCTCCAGCTGCTGCCCCTGCTGCAGTTCTGCAGAAGAGGTTGAGCCATGTGATTAGCATGGGAAATGGGGGAAGCCATTTAGAGGAATTTTCCATGCAAGTACTGCTTCAAGCCACCAACAATTTCTGTGAGGAGAATAAAATTGGAAGTGGGAGCTTTGGTTCAGTGTATCATGCCACACTAGAAGATGGGAAGGAAGTTGCTGTAAAAAGAGCTGAAGTCTCATCCACTTCTCCATCCAATCCAGTTATTATGGGTGGCACCAAAAGGCAAGAAGACAATGACAATGCCTTTATGAATGAGCTTGAAGCTCTATCAAGACTCCACCACAAGAACCTAGTTCGTTTACTAGGTTTCTATGAAGACACAAAAGAACGCATTTTAGTATATGAGTATATGAACAATGGTAGCCTAAATGATCATCTCTACAAGCTCCAAAGTTCTTTTCTAAATTCATGGGCAGGTCGCATAAAGGTAGCTCTAGATGCAGCCAGAGGCATAGAGTATTTACACCAATATGCCACTCCACCAATCATTCATCGTGACATTAAATCATCCAACATATTATTGGATGCCAAGTGGACAGCCAAAGTGTCTGATTTTGGACTATCATTAATGGGTCCTGAAGATGAGGAATCACACCTTTCACTTCTAGCAGCTGGCACAGTTGGCTACATGGACCCTGAATACTATAGGCTTCAGCATTTGACCACAAAGAGTGATGTGTATAGCTTTGGTGTGGTTTTGCTAGAACTCCTATCTGGGCTCAAAGCAATCCATAAAAACGAAAATGGGGTGCCAAGAAATGTAGTAGATTTTATGGTACCCTTCATTAATCAAGATGAGATTCACAGGGTTTTGGACCCAAAAGTGCCACCCCCAACACCATTTGAGATTGAGGCTGTGGCATTTGTGGGTTACTTGGCATCAGATTGTGTTCGTCTAGAAGGTAGAGAAAGACCAACTATGACTCATGTTGTAAATAGCTTGGAAACAGCACTAGCTGCTTGTTTAGCCCAACCAATACTCTCAAGGTCCACCACAGATTCTTCAGACTAG 2340 0.4338 MAFLLNPSFCYLFIISLYFLSSLPIINTLSTVTISETSNQTFICALQHPNQQGQSNLNCTSFPPGAIGLQINPNVSYSEIVGGNGFLCALRPPSSSSSIMGCWRFSANATNVPFKRIYRGPVIEDIEGGNSHVCGLVRGNDGLDLGCWQWYGFNSSMARNMSSIAVGENFVCGLSETGKVTCLGSNNSRVVGHEPGHGGNYSVVAAGFRHACAISLDGSLDCWGDMVGEKPQGRFISLALGENRSCALGYNGLVSCWGSNNFTMPQRLQGTFFEAIVAKRSVFCGVVSSNYSLLCWGTEIVESNTKVFDNVLPGPCRNQCPCGPLSDSAKLCNSPAIICKPCPPAVEPPSSSPPPSSPPSNSPPPSPQPAAESGWSNRMVAFLVVGCVGCSTLLLVLAFFLYKYCKGRVCRVHDSGRLDDEPRNEQEAPAAAPAAVLQKRLSHVISMGNGGSHLEEFSMQVLLQATNNFCEENKIGSGSFGSVYHATLEDGKEVAVKRAEVSSTSPSNPVIMGGTKRQEDNDNAFMNELEALSRLHHKNLVRLLGFYEDTKERILVYEYMNNGSLNDHLYKLQSSFLNSWAGRIKVALDAARGIEYLHQYATPPIIHRDIKSSNILLDAKWTAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLELLSGLKAIHKNENGVPRNVVDFMVPFINQDEIHRVLDPKVPPPTPFEIEAVAFVGYLASDCVRLEGRERPTMTHVVNSLETALAACLAQPILSRSTTDSSD. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00061 779 SUPERFAMILY Protein kinase-like (PK-like) 449 758 IPR011009 -
Seca5g00061 779 Gene3D - 123 320 IPR009091 -
Seca5g00061 779 Gene3D Transferase(Phosphotransferase) domain 1 560 767 - -
Seca5g00061 779 Pfam Protein kinase domain 471 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00061 779 ProSiteProfiles Protein kinase domain profile. 469 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00061 779 CDD STKc_IRAK 475 758 - -
Seca5g00061 779 Pfam Regulator of chromosome condensation (RCC1) repeat 204 225 - -
Seca5g00061 779 MobiDBLite consensus disorder prediction 349 370 - -
Seca5g00061 779 SMART serkin_6 469 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00061 779 ProSitePatterns Protein kinases ATP-binding region signature. 475 497 IPR017441 GO:0005524
Seca5g00061 779 SUPERFAMILY RCC1/BLIP-II 109 299 IPR009091 -
Seca5g00061 779 FunFam Serine/threonine-protein kinase-like protein CCR4 560 776 - -
Seca5g00061 779 MobiDBLite consensus disorder prediction 349 371 - -
Seca5g00061 779 Gene3D Phosphorylase Kinase; domain 1 433 559 - -
Seca5g00061 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Seca5g00061 779 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 169 767 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00061 Seca-Chr5 1293755 1296094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00061 28 775 Receptor kinase-like Gene Family AT5G47850 50.779 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca5g00061 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00061 - - pvu:PHAVU_011G003100g 1103.58