Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00059 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATCGGGGACATTGCAAAATCACACCCTCAAGACTTAACCAGTCTTCTTAAGAAGGTTTCTCAATATTTGCGCAGTAAGAAATGGGATACAAGAGTTGCAGCTGCTCATGCAATTGGATCTATTGCTGAGAGTGTTAAGCACATAAGTTTGAATGAACTTATTGCTTCTGTTGTGTCAAAAATGTCTGAGCATGGGATGTCTTGTAGCATTGAGGATCTGTGTGCATGGCCTTATTTACAATCAAAAATTACAGGAAGCTCATTTCGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCTTTATTAGCATCGGGAGGACAGGAATATGATATTGGAAGTGATAATATAAAGAACCCAAAGGAACGATTGGTTCGCCAGAAGCAAAATCTTCGACGCCGTTTAGGTTTGGATGTGTGTGAGCAATTTATGGACATCAATGATGTAATAAGAGATGAAGATCTTATGGCACACAAATCGGACTCACATCTCAATGGAATAGATCATAGAGTTTTCACATCTTATTCTGTACATAGCATTCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCCAAGTGGCCGAGCGCAAGAGAACTGAATCTTTTAAAGCGCAAAGCAAAAATAAACTCAAAGGACCAAACAAAAAGCTGGTGTGAAGATGGAAGTACAGAGGCACCTGGTGCTCAAAATTTGACTTCGAAAGGAACATGTCCTGATTCAGGAAATTACAGTAAAGCATTCATGGATGTTAATCATGATGAAGATGGATTTGAGCATGATGGAGATGGACAATGGCCTTTCAATACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGATACGGCATGGTAGCGTGATGGCATTGAGAGAGATTTTAACGCATCAAGGTGCTTCTGCTGGAGTATTTAAACATGACCCACGCTGGGGTGGGGCCTTTTTCGTTGAATCAGAAGACAAAAGTATATCAAATATATTGAAGAGAGAGAGGGAGATTGATTTAAATATGCAAGTTTCAGCGGATGAGTCTGTGTCAAACTTGAAGAGGCCAAAACTTGAAGATGTATCATCATCGACCACTGTGGATAGCACAATGACTTGCAGCAATGAAGGTGATATTGAAACCAGCATTAGTTCTGAAACCCATGGATGCAATATACCTTTAGATTACGGGAATGGGAAATTTAATGGTAGTTCTGTTGACATGGATCTGGGATCTCCCTCTGATGGTTTACATGATTCATGCAAGGAACCTGCTAATTTAGCAGAGCAGAAGGGTTATTCCAATGACAATAAGATTCCCTCTGGAAATCCTAGTGTGCTAAGAAATCTTCCTCATAATTGTGAGCTGATGAACTTGGTTAAAGTGGCTAGAAGTTCCTGGCTTCGAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTCTGTGTGTGTTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAAGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCAGCACTAGTAAATGAAACATTGAACATATTGCTGAAAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGCAGTCTTCTAGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTCCTGATTTGCTTGGACGTGTTCTTCCTGCATGTAAAGCTGGGTTGGAGGACCCAGATGATGACGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTTCTTTGCAGGGTCAAACATTGCATTCAATTGTGATGCTGTTGTGGGATATATTGCTTGACTTGGATGATTTAAGTCCATCCACAAGCAGTGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGAGATGGTCCCAAAGATGTATAAAGTTTTTAAATTGGGTGACCAGGAAATAGAAAATGGAGTTAGTGGTTGTGGTGATGATGATGGGGAGGAAAATCCTTATGTGCTTTCAACTTTGGCTCCACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTATTCAGCAATACGGACTCTGGAGAGGCTACTCGAAGCTGGATATAAGAGAAGCATGTCTGAGCTGTCTAGTGCTTCATTTTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATTGTCTTCCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGTTATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACTTGGAGACAGCTGCAAGGTCTTATATGACTTCTTGGATAGAACTTTCTTCTACACCATTTGGTTCAGCATTAGATGCCTCAAAGATGTATTGGCCTGTTGCCTTTCCACGGAAAAGTCAGTTTAGAGCAGCAGCTAAAATGAGAGCTGTGAAGATTGAAAATGAATATGGAGGGGACCTTGGTCTTGAGTCTACAAAAGTAACTATTTCACAAGATAGAAATGGAGATGTTCCTATGAGTACCGTTAAGATTGTTGTTGGTGCTGATGTGGACACATCTGTAACTCATACCCGGGTTGTTACAGCAACTGCTTTGGGAAAATTTGCTTCTAAGTTGACAGAGGGCTCTTTAAAATATGTGATTGATCCACTGTGGAACTCTCTAACCTCTTTGTCTGGTGTCCAACGCCAGGTTGCATCCATGGTACTTATTTCTTGGTTCAAGGAGACTAACAGGAATTCATCTAAAAACCGTGATGCTATTCCTGCTGCCCTCAAAAATTGGTTGCTGGACTTATTAGCATGTCCAGATCCAGCATTCCCAACAAAAGGTTCACTTCTTCCTTATGCTGAACTTTCAAGAACTTATTCAAAGATGCGTAGTGAAGCTGGTCAATTGCTAAATGCTGTCAAGTCTTCTGGTATGTTTAATGAGTTACTAACAACTACTGAAATTGAGTTGGATAGCTTGACTGTGGATGATGCCATTGGTTTTGCATCAAAAATTCCATCATTGTGTAATGATAGTTCTGCAAATGAATCTTTGGGAAAGATCACTATGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACAACTTCAGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTCACATCTGCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGACTCACCCCTATAATTTTACCTTTGATGGCTTCAATCAGAAGAGAGCAGGAAGAAATACTGCAAATGAAGTCAGCTGAGGCCCTTGCTGAGCTAATGTATCACTGCATTGCACGGAGGCCCTGCCCCAATGATAAATTAATTAAGAATATATGTAGTTTGACTTGCATGGATCCCTCTGAGACCCCTCAAGCTAAATCCATTTGCTCCATGGAGAATATTGATGACCAAGGTCTTCTATCTTTTAGAACTCCTGTAAGCAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGGTCAAAGGTGGAGGGATTTATAAGTAGACGTGGATCAGAGCTATCATTGAGGCTTCTGTGTGAGAAGTTTGGTGCTTTGTTATTTGAAAAACTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTTAAGCCAAGCTCCTTTGAATCTCTACTTGTCACTAATGAAAAGCAAGTTACAGTGGCTATTGAATCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGGTCTGTTGCTCCATTGTTAAATGAGGAGTTGAAGCCAAAACTTTTGACACTTCTCCCATGCATTTTCAAATGTATTCAGCATTCCCATGTTGCAGTTAGATTAGCTGCTTCACGGTGCATCACCTCAATGGCCCAGTCAATGACTGTGAAAGTTATGGGGGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCTTCATCAGTCCATGCTCGGCAAGGATCAGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTGTTGGTGGTGCCACTTCTAAGATGCATGAGTGATTGTGATCAGTCTGTCAGACGTAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGAGGCCTTCCACAACCAATTGGATTAGGGGAAGGTATATCTAGAAATGCAGAAGATCTACATTTTCTGGAGCAACTACTTGACAACTCTCATATTGAGGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAACAAGAAGGCATAAATTGGTTAGCTTTTTTGAAACGATTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGAACTCCAATTGGGAATGAGGATCATCTTCCATCTTTAATTATTTGCCCATCAACACTAGTTGGGCATTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCAGTCATCTCTAGTCTTCAGTATGTTGGTTCTGCTCAGGAGCGAATGCTTCTTCGAGATAGCTTTTGCAAGCATAACGTCATTATAACATCATATGATGTTGTCCGTAAAGATATTGATTATCTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGACATATAATCAAGAATGCGAAGTCTAAAGTTACCCTTGCAGTAAAGCAGTTGAAAGCCCAACACCGCTTAATATTGAGTGGGACACCAATCCAGAATAACATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAAGCACATATGGAAAACCACTTTTAGCTGCTAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGTAGGACGAAGGATGAAGTCTTGTCCGATCTGCCAGAGAAAATAATTCAAGACAGATTCTGTGATTTGAGCCCTGTGCAACTTAAACTTTATGAACAGTTTTCTGGTTCTCGTGTTAAACAAGAAGTGTCATCGATTGTAACAACAAATGAGTCAGCTGCAGCAGAAGGAAGTAGTGTTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCAATAATCCATTTCATGCTTCAGGCACTCCAATACTTGCTAAAACTCTGTAGCCATCCATTGCTTGTCGTCGGTCAGAAGATTCCAGATTCACTCTCTACCATCCTCTCGGGTCTGTTGCCCGCTGGCTCTGATGTCATTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCTTGAGATTCTTGAAGAGTGTGGAATTGGAGCCGATGCTTCAGGTTCTGATGGTGCTGTTAGCATTGGGCAGCATAGGGTTTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAATGTCACATATTTGCGTCTGGATGGATCAGTCGAGCCAGAAAAGCGTTTTGACATTGTCAAAGCTTTCAATTCAGACCCTACCATTGACGTCTTACTGCTTACAACACATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAACATGACTGGAATCCGATGCGCGATCATCAGGCTATGGATAGGGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAGAGGTTCAAAGTCTCAGTGGCTAATGCTGTCATTAATTCGGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGACATCTCCAAGAAGGGAGCTTCTGTTGTGAAGAGTTCAGAGGACAACTCTGATGGAGACACTAAATTAGCAGGCAGTGGGAAAGGGTTGAAATCAATACTTGGGGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAATCAATTTTTAGCGAAGCTTAATGGCTAA 6174 0.4155 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAESVKHISLNELIASVVSKMSEHGMSCSIEDLCAWPYLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIGSDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLMAHKSDSHLNGIDHRVFTSYSVHSIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGSTEAPGAQNLTSKGTCPDSGNYSKAFMDVNHDEDGFEHDGDGQWPFNTFVEQLIIDMFDPVWEIRHGSVMALREILTHQGASAGVFKHDPRWGGAFFVESEDKSISNILKREREIDLNMQVSADESVSNLKRPKLEDVSSSTTVDSTMTCSNEGDIETSISSETHGCNIPLDYGNGKFNGSSVDMDLGSPSDGLHDSCKEPANLAEQKGYSNDNKIPSGNPSVLRNLPHNCELMNLVKVARSSWLRNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLPDLLGRVLPACKAGLEDPDDDVRAVAADALIPAAAAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMVPKMYKVFKLGDQEIENGVSGCGDDDGEENPYVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSSASFWPSSIFGDTLRIVFQNLLLETNEDILLCSERVWSLLVQCSVEDLETAARSYMTSWIELSSTPFGSALDASKMYWPVAFPRKSQFRAAAKMRAVKIENEYGGDLGLESTKVTISQDRNGDVPMSTVKIVVGADVDTSVTHTRVVTATALGKFASKLTEGSLKYVIDPLWNSLTSLSGVQRQVASMVLISWFKETNRNSSKNRDAIPAALKNWLLDLLACPDPAFPTKGSLLPYAELSRTYSKMRSEAGQLLNAVKSSGMFNELLTTTEIELDSLTVDDAIGFASKIPSLCNDSSANESLGKITMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCIARRPCPNDKLIKNICSLTCMDPSETPQAKSICSMENIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFISRRGSELSLRLLCEKFGALLFEKLPKLWDCLTEVLKPSSFESLLVTNEKQVTVAIESVSDPQTLINNIQVVRSVAPLLNEELKPKLLTLLPCIFKCIQHSHVAVRLAASRCITSMAQSMTVKVMGAVVENAIPMLEDASSVHARQGSGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRRSVTHSFAALVPLLPLARGLPQPIGLGEGISRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTPIGNEDHLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMLLRDSFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQSTYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRFCDLSPVQLKLYEQFSGSRVKQEVSSIVTTNESAAAEGSSVSTKASSHVFQAIIHFMLQALQYLLKLCSHPLLVVGQKIPDSLSTILSGLLPAGSDVISELHKLHHSPKLVALLEILEECGIGADASGSDGAVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINSENASMKTMNTDQLLDLFASADISKKGASVVKSSEDNSDGDTKLAGSGKGLKSILGGLEELWDQSQYTEEYNLNQFLAKLNG. 2058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00059 2057 SMART ultradead3 1449 1645 IPR014001 -
Seca5g00059 2057 FunFam TATA-binding protein-associated factor BTAF1 1200 1411 - -
Seca5g00059 2057 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2056 IPR044972 GO:0003677|GO:0016887|GO:0017025
Seca5g00059 2057 Pfam Domain of unknown function (DUF3535) 783 1236 IPR022707 -
Seca5g00059 2057 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1811 1985 IPR001650 -
Seca5g00059 2057 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1465 1635 IPR014001 -
Seca5g00059 2057 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Seca5g00059 2057 Gene3D - 1426 1684 IPR038718 -
Seca5g00059 2057 CDD DEXHc_Mot1 1453 1685 IPR044078 GO:0005524
Seca5g00059 2057 SMART helicmild6 1853 1939 IPR001650 -
Seca5g00059 2057 Gene3D - 865 1409 IPR011989 -
Seca5g00059 2057 FunFam TATA-binding protein-associated factor BTAF1 508 688 - -
Seca5g00059 2057 Gene3D - 509 734 IPR011989 -
Seca5g00059 2057 MobiDBLite consensus disorder prediction 251 268 - -
Seca5g00059 2057 SUPERFAMILY ARM repeat 6 1492 IPR016024 -
Seca5g00059 2057 MobiDBLite consensus disorder prediction 391 414 - -
Seca5g00059 2057 FunFam TATA-binding protein-associated factor 1695 2021 - -
Seca5g00059 2057 Pfam Helicase conserved C-terminal domain 1839 1939 IPR001650 -
Seca5g00059 2057 Gene3D - 4 94 IPR011989 -
Seca5g00059 2057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1686 1995 IPR027417 -
Seca5g00059 2057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1432 1685 IPR027417 -
Seca5g00059 2057 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1423 1684 - -
Seca5g00059 2057 CDD SF2_C_SNF 1808 1950 - -
Seca5g00059 2057 MobiDBLite consensus disorder prediction 244 268 - -
Seca5g00059 2057 Pfam SNF2-related domain 1471 1773 IPR000330 GO:0005524|GO:0140658
Seca5g00059 2057 Gene3D - 1695 2020 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00059 Seca-Chr5 1262222 1286361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00059 1448 1994 RAD5 or RAD16-like Gene Family AT1G02670 26.480 1.26e-39 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00059 DUF3535 1.3e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00059 K15192 - gmx:100777977 3569.24