Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00048 ATGGGGTTTAATAGAGATAGACTTGTTTGGGAAGGTGCATCAGCTAAGGTTTATAAAAGGTCTCTTCCATTTGGTGGTGATGTAGCAGTGAAAAGATTTGAGAGAGCTGATGATTTAGATTGTCTACACAATCCTTTCGCCACTGAGTTTGCTACAATGGTGGGTTACTTGAGGCACAAAAACTTGTTTCAGTTTAAGGGATGGTTTTGTGAGGGGAATGAGTTGGTTCCGGTTTATGAGTACCTACCCAATGGGAGCTTGGATAAAGTTCTGCATAGAAACTTCAATTCTTCAAGTGTCCTTTCATGGAAGCAAAGAGTTAATATAGTTCTAGGGGTTGCTTCTGCTCTTACCTATCTTCATGAAGAATGTGAGAGGCAGATCATTCATAGTGATGTGAATACCTGCAATATAATGCTTGATGCAGATTTCAATGCCAAGCTTGGGGGTTTTGGACTTGTAGAAGTGTATGAACATAGTTCTATCACAAGGGATGCTACTATACCAGCAGGGACAATGGGTTATCTAGCTCCTGAATATGTGTATACTGGTGTTCCTACTGTCAAAACTGATGTGTATAGCTTTGGGGTAGTGATGATAGAAGTGGAAACTGGGAGAAAGCCTGTTCAAGATGATGGCAGTGGCACTGTTGTTGGTGATTATGTGTGGAACTTGTGGGAAAAGAACAAACTCATTGAGGTTTCTGATCCAAGATTGATGGGGAAGTTTGATACACTAGAGATGGAAAGGATGCTTCTGGTGGGGCTTCTTTGTGTACACCGTGATCATGATATGGCTTTGGTTGTTCATGATTTTGGACATGAAGCTTTACAAATTATGTTTGCTTTGGTTGTTGAAACCCAGAGGAAAAAGGTTTTGGTAGAATTCTCTAATTATCTTAAACAAAGTGTAGCAGCTAGCTTTTGA 927 0.4024 MGFNRDRLVWEGASAKVYKRSLPFGGDVAVKRFERADDLDCLHNPFATEFATMVGYLRHKNLFQFKGWFCEGNELVPVYEYLPNGSLDKVLHRNFNSSSVLSWKQRVNIVLGVASALTYLHEECERQIIHSDVNTCNIMLDADFNAKLGGFGLVEVYEHSSITRDATIPAGTMGYLAPEYVYTGVPTVKTDVYSFGVVMIEVETGRKPVQDDGSGTVVGDYVWNLWEKNKLIEVSDPRLMGKFDTLEMERMLLVGLLCVHRDHDMALVVHDFGHEALQIMFALVVETQRKKVLVEFSNYLKQSVAASF. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00048 308 Pfam Protein tyrosine and serine/threonine kinase 12 211 IPR001245 GO:0004672|GO:0006468
Seca5g00048 308 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Seca5g00048 308 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Seca5g00048 308 FunFam Lectin-domain containing receptor kinase A4.3 82 293 - -
Seca5g00048 308 PANTHER - 2 263 - -
Seca5g00048 308 ProSiteProfiles Protein kinase domain profile. 3 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00048 308 Gene3D Transferase(Phosphotransferase) domain 1 82 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00048 Seca-Chr5 1038967 1039981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00048 2 271 Receptor kinase-like Gene Family AT5G42120 62.455 1.09e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca5g00048 PK_Tyr_Ser-Thr 3.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00048 - - gmx:100783805 454.907