Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00040 ATGCAACCGACATCTGGCGGTGGGCTTCAGCGGTTCCACTCAACTCCGGCGAGTTGGTTAGAATCACTTCTTCTAAAGGACGAAGAACAACAGCAACAGCCGTTATCCTTCACTCAGCTGCTTTCCTCTTCTTCCTCTAATCCAAATCCAATCATCACAGAGGAAGTTGAAAAGCATACTAGTCATGACATCGAAATTGACAAGATTTTAGAGGATTCTGTGCCTTGTAGGCTTCGTGCAAAGCGTGGTTGTGCTACGCATCCAAGGAGCATTGCTGAAAGGGTTCGGAGGACTCGAATCAGTGACCGCATAAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCTGACATGCTAGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAATCAGATTGAGGTAACCTTTTGTGTGTGA 435 0.4506 MQPTSGGGLQRFHSTPASWLESLLLKDEEQQQQPLSFTQLLSSSSSNPNPIITEEVEKHTSHDIEIDKILEDSVPCRLRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQNQIEVTFCV. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00040 144 Pfam Helix-loop-helix DNA-binding domain 89 135 IPR011598 GO:0046983
Seca5g00040 144 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 140 - -
Seca5g00040 144 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 134 IPR011598 GO:0046983
Seca5g00040 144 CDD bHLH_AtbHLH_like 89 140 IPR045239 -
Seca5g00040 144 Gene3D - 85 141 IPR036638 GO:0046983
Seca5g00040 144 FunFam Transcription factor bHLH130 family 85 142 - -
Seca5g00040 144 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 140 IPR036638 GO:0046983
Seca5g00040 144 SMART finulus 90 140 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00040 Seca-Chr5 962432 965658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00040 63 139 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 80.519 1.02e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g00040 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00040 - - gmx:100527723 163.31