Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00036 ATGAAGGAAGGGAAGCTTATTTGCTTCACTTGTGAAACCCCTTGGCATGTGGCTTGTCTCTCCTCCCTTCCACCCACGCTTGCTAGCACCATTAAATGGTTGTGTCCAGATTGCTCCAATCCCAATCCTTTTACATCACCCCTAACCTCAGCCTCAGCCCCAGCCCTAGCCCCTGGAGAAGGAGATGAATTGAGAAACCTGTTCTTTTCTCTAAAAGCAGTGGAGACGGATGCTTCTCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGTCTGGAAAGGCCGGCAAGGCAGTTGAAGAAAAAGACAAGAATGAAAATGGCAAGTCTGTATTTGATATTGTCACCATGATTCTCAGATGCCCCATTTGCATACAATTGCCAGAGAGGCCTGTCACGACTCCTTGTGGTCACACTTTCTGTCTAAAGTGCTTCAAGAAATTGATTCAACAAGGGAAAAGAACTTGTAGCATTTGTCGGCAAGGTATTCCTGCAAAAATGGACAACCAGCCTCGTATCAATTCTGCATTGGCACATGCCATTTGTATTGCAAAGAAAGACGACAGTAATGGTAGAGTCAATAGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATATGACGGATCGTGCACAAAGGAAGGGTCGTGCTAATGCTGCAAGTGGAAAGATTTTTGTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCAGAGAATGACCCTTTGCATAATAAGGGTCTGGTAGTTGGTGAATCTTGGCCAGATAGGCTGGAGTGTAGGCAATGGGGTGCTCACTTCTTACCAATTGGTGGCATTGCCGGACAATCAAATCGAGGTGCACAATCCGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAGGATCTCACTGGAAACAAACACACAAACAAGAATCACTCTTTTGACCAGAAGTTTGAAAAATACAATGCGCACTCCAGATCAGTTGTCAAGAGGATCTCACAAAAAGAAGCGATCCTCATATGCCCCCGAGAGTGGAGTGCGGGTTTCAAAGTTTGTCGATTTCTATTCATAAGATGTGACAATGAACCTGCCCCTTGGACAAGGTTATGTATTATAGTATATCTAACACCCTATTGCTTTTTGACATTCTATTTACTAAATTGTCTTAAATGGAAACATAGTGATGATCGTGGGGATAGGCCCAAACCCTTGCCATTCATTAATGAGCTACAAAAGGCTACCACCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGATGAAGATTCTTGTTGGAAATGGAAGAAACCACCACCCCCCAGCAGAAAAAAGGTACAAATTGAGGAATCTACCAAGATAGAAAAGTCAAGTAAAGGAAAAAGGAAATTACAAAATATGTCAATCAAGGAACAATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCATGTTATGGATTCACCAGTAACAACACCATGTGGTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTAGCTGGTCATACTTTCATGAGAGAGAGAAACATATGTGGGAGAACGCTTAGGTCCCAAAAAAATGCGATGAAATGTCCTACCTGCACTATTGACATCTATGATTATCTTCAAAACTTTCAGGTTGATATAGGTTTGAAGGGTGTAATTGAGTCACTGAAAGCCAAGGTTGAAGAAAATGGAGAAACGTTAGAGGCAAGTGAAGATATAGATCGATTACAGGAAAATGGTGTTGAAGAAACCAATAAGGCGACAGATTCTGTAGTGCAGCACAATGCAAAAAGAAAGAAAATTGATTCTACAAAACAATTTCCTGAGATGAGTGATGATGGTAAAATGAATAGAGGGAAAGAAATAAAAGCTAAGAAAGTAGAGGATGAAGAAAATGTTTCTCCATTAAGTCCTCTCAATATGTCATCAAATGAGTGA 2001 0.4123 MKEGKLICFTCETPWHVACLSSLPPTLASTIKWLCPDCSNPNPFTSPLTSASAPALAPGEGDELRNLFFSLKAVETDASLSREEKNKKQQDLMSGKAGKAVEEKDKNENGKSVFDIVTMILRCPICIQLPERPVTTPCGHTFCLKCFKKLIQQGKRTCSICRQGIPAKMDNQPRINSALAHAICIAKKDDSNGRVNRPSRVPPYTNNQDKPDQPYMTDRAQRKGRANAASGKIFVTVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQWGAHFLPIGGIAGQSNRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLTGNKHTNKNHSFDQKFEKYNAHSRSVVKRISQKEAILICPREWSAGFKVCRFLFIRCDNEPAPWTRLCIIVYLTPYCFLTFYLLNCLKWKHSDDRGDRPKPLPFINELQKATTIFERTKSPAWDFDDEDSCWKWKKPPPPSRKKVQIEESTKIEKSSKGKRKLQNMSIKEQLRKGFSCQICKHVMDSPVTTPCGHNFCKSCLEGALAGHTFMRERNICGRTLRSQKNAMKCPTCTIDIYDYLQNFQVDIGLKGVIESLKAKVEENGETLEASEDIDRLQENGVEETNKATDSVVQHNAKRKKIDSTKQFPEMSDDGKMNRGKEIKAKKVEDEENVSPLSPLNMSSNE. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00036 666 SUPERFAMILY PUA domain-like 226 387 IPR015947 -
Seca5g00036 666 MobiDBLite consensus disorder prediction 198 214 - -
Seca5g00036 666 MobiDBLite consensus disorder prediction 584 603 - -
Seca5g00036 666 Pfam SAD/SRA domain 253 340 IPR003105 -
Seca5g00036 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 188 IPR013083 -
Seca5g00036 666 SMART ring_2 123 161 IPR001841 -
Seca5g00036 666 SMART ring_2 497 553 IPR001841 -
Seca5g00036 666 SUPERFAMILY RING/U-box 489 578 - -
Seca5g00036 666 MobiDBLite consensus disorder prediction 80 105 - -
Seca5g00036 666 SUPERFAMILY RING/U-box 120 183 - -
Seca5g00036 666 MobiDBLite consensus disorder prediction 190 229 - -
Seca5g00036 666 Gene3D - 223 363 IPR036987 -
Seca5g00036 666 ProSiteProfiles YDG domain profile. 252 414 IPR003105 -
Seca5g00036 666 ProSiteProfiles Zinc finger RING-type profile. 123 162 IPR001841 -
Seca5g00036 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 599 IPR013083 -
Seca5g00036 666 ProSiteProfiles Zinc finger RING-type profile. 497 554 IPR001841 -
Seca5g00036 666 MobiDBLite consensus disorder prediction 613 653 - -
Seca5g00036 666 MobiDBLite consensus disorder prediction 455 480 - -
Seca5g00036 666 Pfam Zinc finger, C3HC4 type (RING finger) 122 165 - -
Seca5g00036 666 ProSitePatterns Zinc finger RING-type signature. 512 521 IPR017907 -
Seca5g00036 666 MobiDBLite consensus disorder prediction 584 666 - -
Seca5g00036 666 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 340 IPR045134 -
Seca5g00036 666 Pfam RING-type zinc-finger 497 551 IPR027370 -
Seca5g00036 666 SMART G9a_1 247 379 IPR003105 -
Seca5g00036 666 SUPERFAMILY FYVE/PHD zinc finger 6 45 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00036 Seca-Chr5 838249 842017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00036 3 583 C2H2 Transcription Factor Family AT5G39550 46.580 7.20e-178 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00036 K10638 - gmx:100801535 738.799