Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00035 ATGGTTGTGTCCAGATTGCTCCAATCCCAATCCTTTTACATCACCCCTAACCTCAGCCTCAGCCCCAGCCCTACCCCTGGAGAAGGAGATGAATTGAGAAACCTGTTCTTTTCTCTAAAAGCAGTGGAGACGGATGCTTCTCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGTCCGGAAAAGCCGGCAAGGCAGTTGAAGAAAAAGACAAGAATGAAAATGGCAAGTCTGTATTTGATATTGTCACCATGATTCTCAGATGCCCCATTTGCATTCAATTTCCAGAGAGGCCTGTCACGACTCCTTGTGGTCACACTTTCTGTCTAAAGTGCTTCAAGAAATTGATTCAACAAGGGAAAAGAACTTGTAGCATTTGTCGGCAAGGTATTCCTGCAAAAATGGCCAACCAGCCTCGTATCAATTCTGCATTGGCACATGCCATTTGTATTGCAAAGAAAGACGACAGTAATGGTAGAGTCAATAGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATATGACGGATCGTGCACAAAGGAAGGGTCGTGCTAATGCTGCAAGTGGAAAGATTTTTTTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCAGAGAATGACCCTTTGCATAATAAGGGTCTGGTAGTTGGTGAATCTTGGCCAGATAGGCTGGAGTGTAGGCAATGGGGTGCTCACTTCTTACCAATTGGTGGCATTGCCGGACAATCAAATCGTGGTGCACAATCTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAGGATCTCACTGGAAACAAACGCACAAACAAGAATCACTCTTTTGACCAGAAGTTTGAAAAATACAATCGCGCACTCCAGATCAGTTGTCAAGAGGGTTATCCGGTTCGAGTTGTGAGATCTCACAAAAAGAAGCGATCCTCATATGCCCCCGAGAGTGGAGTGCGTGATGATCGTGGGGATAGGCCCAAACCCTTGCCATTCATTAATGAGCTACAAAAGGCTACCACCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGATGAAGATTCTTGTTGGAAATGGAAGAAACCACCACCCCCCAGCAGAAAAAAGGTACAAATTGAGGAATCTACCAAGATAGAAAAGTCAAGTAAAGGAAAAAGGAAATTCCAAAAGATGTCAATCAAGGAACGATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCATGTTATGGATTCACCAGTAACAACACCATGTGGTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTCGCTGGTCAGACTTTCATGAGAGAGAGAAACATATGTGGGAGAATGCTTAGGTCCCAAAAAAATGTGATGAAATGTCCTACCTGCACTATTGACATCTCTGATTATCTTCAAAACTTTCAGGAAAATGGTGTTGAAGAAACCAATAAGGCGACAGATTCTGTAGTGAAGCACAATGCAAAAAGAAAGAAAATTGATTCTACAAAACAATTTCCTGAGATGAGTGATGATGGTAAAATGAATAGAGGGAAAGAAATAAAAGCTGAGAAAGTAGAGGATGAAGAAAATGTTTCTCCATTAAGTCCTCTCAATATGTCATCAAATGAGTGA 1689 0.4198 MVVSRLLQSQSFYITPNLSLSPSPTPGEGDELRNLFFSLKAVETDASLSREEKNKKQQDLMSGKAGKAVEEKDKNENGKSVFDIVTMILRCPICIQFPERPVTTPCGHTFCLKCFKKLIQQGKRTCSICRQGIPAKMANQPRINSALAHAICIAKKDDSNGRVNRPSRVPPYTNNQDKPDQPYMTDRAQRKGRANAASGKIFFTVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQWGAHFLPIGGIAGQSNRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLTGNKRTNKNHSFDQKFEKYNRALQISCQEGYPVRVVRSHKKKRSSYAPESGVRDDRGDRPKPLPFINELQKATTIFERTKSPAWDFDDEDSCWKWKKPPPPSRKKVQIEESTKIEKSSKGKRKFQKMSIKERLRKGFSCQICKHVMDSPVTTPCGHNFCKSCLEGAFAGQTFMRERNICGRMLRSQKNVMKCPTCTIDISDYLQNFQENGVEETNKATDSVVKHNAKRKKIDSTKQFPEMSDDGKMNRGKEIKAEKVEDEENVSPLSPLNMSSNE. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00035 562 MobiDBLite consensus disorder prediction 329 349 - -
Seca5g00035 562 Pfam SAD/SRA domain 221 340 IPR003105 -
Seca5g00035 562 MobiDBLite consensus disorder prediction 384 411 - -
Seca5g00035 562 MobiDBLite consensus disorder prediction 166 182 - -
Seca5g00035 562 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Seca5g00035 562 MobiDBLite consensus disorder prediction 501 562 - -
Seca5g00035 562 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 41 340 IPR045134 -
Seca5g00035 562 Pfam Zinc finger, C3HC4 type (RING finger) 91 129 IPR018957 GO:0046872
Seca5g00035 562 SUPERFAMILY RING/U-box 418 486 - -
Seca5g00035 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 156 IPR013083 -
Seca5g00035 562 ProSiteProfiles YDG domain profile. 220 369 IPR003105 -
Seca5g00035 562 MobiDBLite consensus disorder prediction 159 191 - -
Seca5g00035 562 ProSiteProfiles Zinc finger RING-type profile. 426 483 IPR001841 -
Seca5g00035 562 MobiDBLite consensus disorder prediction 48 73 - -
Seca5g00035 562 Gene3D - 191 342 IPR036987 -
Seca5g00035 562 ProSiteProfiles Zinc finger RING-type profile. 91 130 IPR001841 -
Seca5g00035 562 SUPERFAMILY PUA domain-like 194 340 IPR015947 -
Seca5g00035 562 SMART G9a_1 215 349 IPR003105 -
Seca5g00035 562 MobiDBLite consensus disorder prediction 325 351 - -
Seca5g00035 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 550 IPR013083 -
Seca5g00035 562 SMART ring_2 426 482 IPR001841 -
Seca5g00035 562 SMART ring_2 91 129 IPR001841 -
Seca5g00035 562 Pfam RING-type zinc-finger 426 480 IPR027370 -
Seca5g00035 562 SUPERFAMILY RING/U-box 88 151 - -
Seca5g00035 562 MobiDBLite consensus disorder prediction 504 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00035 Seca-Chr5 830898 834580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00035 6 496 C2H2 Transcription Factor Family AT5G39550 48.885 1.17e-172 501