Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00034 ATGGCACAATTACCTTGTGACGACAAAGGGGTGTGTATGGTATGCAAATCTCTCCCAACGAAGGAAGGGAAGCTTGTTTGCTTCACTTGTGAAACCCCTTGGCATGTGGCTTGTCTCTCCTCCCTTCCACCCACGCTTGCTAGCACCATTAAATGGTTGTGTCCAGATTGCTCCAATCCCAATCCTTTTACATCACCCCTAACCTCAGCCTCAGCCCCAGCCCTAGCCCTTGGAGAAGGAGATGAATTGAGAAACCTGTTCTTTTCTCTAAAAGCAGTGGAGACGGATGCTTCTCTCTCACGAGAAGAGAAGAACAAAAAACAACAAGACCTAATGTCCGGAAAGGCCGGCAAGGCAGTTGAAGAAAAAGACAAGAATGAAAATGGCAAGTCTGTATCTGATATTGTCACCATGATTCTCAGATGCCCCATTTGCATTCAATTGCCAGAGAGGCCTGTCACGACTCCTTGTGGTCACACTTTCTGTCTAAAGTGCTTCAAGAAATTGATTCAACAAGGGAAAAGAACTTGTAGCATTTGTCGGCAAGGTATTCCTGCAAAAATGGCCAACCAGCCTCGTATCAATTCTACATTGGCACATGCCATTTGTATTGCAAAGAAAGACGACAGTAATGGTAGAGTCAATAGGCCTTCTCGTGTTCCTCCTTATACAAATAATCAAGATAAACCAGATCAACCATATATGACGGATCGTGCACAAAGGAAGGGTCGTGCTAATGCTGCAAGTGGAAAGATTTTTGTCACTGTGCCTACTGATCATTTTGGTCCAATCCCACCAGAGAATGACCCTTTGCATAATAAGGGTCTGGTAGTTGGTGAATCTTGGCCAGATAGGCTGGAGTGTAGGCAATGGGGTGCTCACTTCTTACCAATTGGTGGCATTGTCGGACAATCAAATCGTGGTGCACAATCTGTTGTTCTCTCTGGAGGTTATGTTGATGATGAGGATCATGGAGAATGGTTTCTCTACACAGGAAGTGGTGGTAAGGATCTCACTGGAAACAAACGCACAAACAAGAATCACTCTTTTGACCAGAAGTTTGAAAAATACAATCGCGCACTCCAGATCAGTTGTCAAGAGGGTTATCCGGTTCGAGTTGTGAGATCTCACAAAAAGAAGCGATCCTCATATGCCCCCGAGAGTGGAGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATTGCGGGACAACAGGGTTTCAAAGTTTGTCGATTTCTATTCATAAGATGTGACAATGAACCTGCCCCTTGGACAAGTGATGATCGTGGGGATAGGCCCAAACCCTTGCCATTCATTAATGAGCTACAAAAGGCTACCACCATATTTGAAAGAACCAAATCTCCAGCATGGGATTTTGATGATGAAGATTCTTGTTGGAAATGGAAGAAACCACCACCCCCCAGCAGAAAAAAGGTACAAATTGAGGAATCTACCAAGATAGAAAAGTCAAGTAAAAGAAAAAGGAAATTCCAAAAGATGTCAATCAAGGAACAATTGCGAAAAGGGTTCTCATGCCAGATATGCAAGCATGTTATGGATTCACCAGTAACAACACCATGTGGTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTCGCTGGTCAGACTTTCATGAGAGAGAGAAACATATGTGGGAGAATGCTTAGGTCCCAAAAAAATGTGATGAAATGTCCTACCTGCACTATTGACATCTCTGATTATCTTCAAAACTTTCAGGTTGATATAGGTTTGAAGGGTGTAATTGAGTCACTGAAAGCCAAGGTTGAAGAAAATGGAGAAACGTTAGAGGCAAGTGAAGATATAGATCGATTACAGGAAAATGGTGTTGAAGAAACCAATAAGGCGACAGATTCTGTAGTGAAGCACAATGCAAAAAGAAAGAAAATTGATTCTACAAAACAATTTCCTGAGATGAGTGATGATGGTAAAATGAATGGAGGGAAAGAAATAAAAGCTGAGAAAGTAGAGGATGAAGAAAATGTTTCTCCATTAAGTCCTCTCAATATGTCATCAAATGAGTGA 2055 0.4224 MAQLPCDDKGVCMVCKSLPTKEGKLVCFTCETPWHVACLSSLPPTLASTIKWLCPDCSNPNPFTSPLTSASAPALALGEGDELRNLFFSLKAVETDASLSREEKNKKQQDLMSGKAGKAVEEKDKNENGKSVSDIVTMILRCPICIQLPERPVTTPCGHTFCLKCFKKLIQQGKRTCSICRQGIPAKMANQPRINSTLAHAICIAKKDDSNGRVNRPSRVPPYTNNQDKPDQPYMTDRAQRKGRANAASGKIFVTVPTDHFGPIPPENDPLHNKGLVVGESWPDRLECRQWGAHFLPIGGIVGQSNRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLTGNKRTNKNHSFDQKFEKYNRALQISCQEGYPVRVVRSHKKKRSSYAPESGVRYDGIYRIEKCWQIAGQQGFKVCRFLFIRCDNEPAPWTSDDRGDRPKPLPFINELQKATTIFERTKSPAWDFDDEDSCWKWKKPPPPSRKKVQIEESTKIEKSSKRKRKFQKMSIKEQLRKGFSCQICKHVMDSPVTTPCGHNFCKSCLEGAFAGQTFMRERNICGRMLRSQKNVMKCPTCTIDISDYLQNFQVDIGLKGVIESLKAKVEENGETLEASEDIDRLQENGVEETNKATDSVVKHNAKRKKIDSTKQFPEMSDDGKMNGGKEIKAEKVEDEENVSPLSPLNMSSNE. 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00034 684 Pfam RING-type zinc-finger 515 569 IPR027370 -
Seca5g00034 684 Gene3D - 242 439 IPR036987 -
Seca5g00034 684 MobiDBLite consensus disorder prediction 602 671 - -
Seca5g00034 684 SUPERFAMILY RING/U-box 507 596 - -
Seca5g00034 684 MobiDBLite consensus disorder prediction 99 128 - -
Seca5g00034 684 SMART G9a_1 266 423 IPR003105 -
Seca5g00034 684 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Seca5g00034 684 SMART PHD_3 11 58 IPR001965 -
Seca5g00034 684 Pfam SAD/SRA domain 272 422 IPR003105 -
Seca5g00034 684 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 607 IPR045134 -
Seca5g00034 684 SUPERFAMILY PUA domain-like 245 441 IPR015947 -
Seca5g00034 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 207 IPR013083 -
Seca5g00034 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 602 IPR013083 -
Seca5g00034 684 MobiDBLite consensus disorder prediction 602 684 - -
Seca5g00034 684 ProSitePatterns Zinc finger PHD-type signature. 12 57 IPR019786 -
Seca5g00034 684 MobiDBLite consensus disorder prediction 217 233 - -
Seca5g00034 684 SUPERFAMILY FYVE/PHD zinc finger 4 64 IPR011011 -
Seca5g00034 684 Pfam Zinc finger, C3HC4 type (RING finger) 141 184 - -
Seca5g00034 684 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Seca5g00034 684 SUPERFAMILY RING/U-box 139 202 - -
Seca5g00034 684 MobiDBLite consensus disorder prediction 209 248 - -
Seca5g00034 684 SMART ring_2 515 571 IPR001841 -
Seca5g00034 684 SMART ring_2 12 57 IPR001841 -
Seca5g00034 684 SMART ring_2 142 180 IPR001841 -
Seca5g00034 684 ProSitePatterns Zinc finger RING-type signature. 530 539 IPR017907 -
Seca5g00034 684 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 242 437 - -
Seca5g00034 684 ProSiteProfiles Zinc finger RING-type profile. 515 572 IPR001841 -
Seca5g00034 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00034 Seca-Chr5 823283 827120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00034 3 601 C2H2 Transcription Factor Family AT5G39550 54.395 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00034 K10638 - gmx:100801535 899.427