Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00028 ATGGCTTCCAGTTCCATAGCTGCATCCCAGGTTCTATTGTCCAATCCCATGTTAGGAAAACACCCAGCAAGAGGAGCAAGGTTTTTGAGGACAGGAACCACAAGCTCTCATTACAGCACTTTGCAGGTTCACGCCTCACAGGAGCCTCGCAGACCCCAGAGAGCACCCCCTGGAGTTGACACAAGAATCCATTGGGACAACGAAGATGAAGGTTGGGTTGGAGGTAGTGGCAAACAGCAACAAGAGGAGAAACCCAACAACTTGTTGGGTGAAAACTTTGCTGATTTGCTCACCAATTTTTCAGGCTCTCATTATGAATTCTTGGGAATATCACCAGAAGCAGATTTAGAAGAAATTAAAGTAGCTTACAGAAGACTATCAAAGGAGTACCATCCAGACACAACTTCACTCCCTCTCAAAACTGCCTCAGAAAAATTCATGAAATTAAGAGAGGTTTACAATGTTCTTAGCAATGAAGAAACTCGGAGATTTTATGATTGGACCCTTGCTCAAGAGGCTGCAAGTCGCCAAGCAGAGAAAATGAAAGTAAAATTTGAGGATCCTTATGAGCAAGATGTCAAGAACTGGGAACCTGTTCCAGACATGGTTGACCGGCTTGGTGGAAGGAATATGAAGCTTAGTGATCAAGCAGTTTCTGCCATCACCATTGATTTTTTTATCATTATTTTTGCCCTATGTTGTATCGTTTACGTTGTTTTCTTTAAAGAACCATATTACTAG 741 0.4251 MASSSIAASQVLLSNPMLGKHPARGARFLRTGTTSSHYSTLQVHASQEPRRPQRAPPGVDTRIHWDNEDEGWVGGSGKQQQEEKPNNLLGENFADLLTNFSGSHYEFLGISPEADLEEIKVAYRRLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEETRRFYDWTLAQEAASRQAEKMKVKFEDPYEQDVKNWEPVPDMVDRLGGRNMKLSDQAVSAITIDFFIIIFALCCIVYVVFFKEPYY. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00028 246 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 26 245 IPR044618 -
Seca5g00028 246 SUPERFAMILY Chaperone J-domain 79 165 IPR036869 -
Seca5g00028 246 Gene3D DnaJ domain 97 190 IPR036869 -
Seca5g00028 246 CDD DnaJ 104 158 IPR001623 -
Seca5g00028 246 PRINTS DnaJ domain signature 105 123 IPR001623 -
Seca5g00028 246 PRINTS DnaJ domain signature 141 161 IPR001623 -
Seca5g00028 246 PRINTS DnaJ domain signature 123 138 IPR001623 -
Seca5g00028 246 FunFam DnaJ homolog subfamily C member 4 92 190 - -
Seca5g00028 246 ProSitePatterns Nt-dnaJ domain signature. 146 165 IPR018253 -
Seca5g00028 246 ProSiteProfiles dnaJ domain profile. 103 169 IPR001623 -
Seca5g00028 246 SMART dnaj_3 102 161 IPR001623 -
Seca5g00028 246 MobiDBLite consensus disorder prediction 36 61 - -
Seca5g00028 246 Pfam DnaJ domain 104 166 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00028 Seca-Chr5 673141 673976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00028 104 171 C2H2 Transcription Factor Family AT1G74250 40.278 2.85e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00028 K23051 - gmx:100819309 337.806