Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00022 ATGACATCCAATAATCCTCATGAGATTATGGACGATGAGGGGTTTGATTGGGAAGCGGCTGCAAGAGAAATTGACGTCGTTTGCCAAATGACCAGTGACGCAAAGGGAAAGGGAAAGGTTTCTCAGAAGGGAAAGGGAAAGCAAACCACTCTCGATAAGTTCGTGGCTAATGCCAAGAAGGAAACCCCAACGCCTCAGTTCCAAGAAGATGCTGAAGGTCCTCCCTGCACCCACTACTTTGATGCCGAGGCAGCCAAAACATGGATATACCCCGGTACTGTACTGGTTGTAGTTAATGTTCCTCCCCGTGACTATCAATTCAATATTACCCAGTCTGCACTCTTTTCAAACACATTGGTGGCCTTGCCAACGGGACTTGGCAAAACACTCATTGCTGCGGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGACCACTAGTCATGCAGCAAATTGAAGCATGCCATAATATTGTGGGGATACCTCAAGACTGGACGGTTGATATGACTGGTCAGCTAAGTCCTCCTAAAAGAGCTCGTTTGTGGAAAACAAAGCGAGTATTCTTTGTCACTCCACAAGTATTGGAAAAAGATATTCATTCTGGTACATGTTCGGTGAAGAACTTGGTATGCTTGGTGATTGATGAAGCACACAGAGCAATGGGGAATTACTCTTATTGTGAAGCAGTTCGTGAGATAATGGCTGTACAAGTGCAACTGAGAATATTAGCGTTAACTGCAACCCCGGGAGCAAAGCAGCAGACGGTTCAGGATGTTATTGATAATCTGCATATCTCCAAGCTTGAATATCGCAGTGAAACTGACCATGACGTTATCTCATATGTTCACAACAGGAAAATAGAGTTGATACAGGTTGAAATGGGCCAAGATGCTGAAGAAATAAACAATAAGATTTTGGAAGTGATACGCCCTATAGTAGCTAGGCTTACTGCTATGGGGGTCATTCATAGAGATTATCGCACTCTGAGCCCTTGTGTATTACTTGAAATAAGGGAAAAGTTTCGTCTGGGCCAGGGCCATAGGCAAGATCTTTCTCATGTCAACTATGGAGATGTTGAAGGGTATTTTGGAGTTCTTATTACACTTTATTACATCCATAAGCTACTTTCAAGTCATGGAATAAGGCCAGCATCTGAGATGCTTGAAAGAAAACTGAAGCAAGGATATTCTGAAAGCAAGACAACTAATGCAGCAAAGCTTGTCTCACGGAGCATCAAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAGGACATTCTGAATGCACTTCGAGATACTGGGGATCTAGTCAGAGCTACAGAGTTTATTGGTCAAAGTTCAGGTAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGTTCCGGTGCCTACAATGTCATCGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACAGGGAGAAAGCACGATGGACGAGTTGATATCCTTTGGTTGTTAGTTTGA 1623 0.4276 MTSNNPHEIMDDEGFDWEAAAREIDVVCQMTSDAKGKGKVSQKGKGKQTTLDKFVANAKKETPTPQFQEDAEGPPCTHYFDAEAAKTWIYPGTVLVVVNVPPRDYQFNITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQDWTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIHSGTCSVKNLVCLVIDEAHRAMGNYSYCEAVREIMAVQVQLRILALTATPGAKQQTVQDVIDNLHISKLEYRSETDHDVISYVHNRKIELIQVEMGQDAEEINNKILEVIRPIVARLTAMGVIHRDYRTLSPCVLLEIREKFRLGQGHRQDLSHVNYGDVEGYFGVLITLYYIHKLLSSHGIRPASEMLERKLKQGYSESKTTNAAKLVSRSIKSQVVQNARSITGAFQDILNALRDTGDLVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDILWLLV. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00022 540 FunFam Fanconi anemia, complementation group M 97 292 - -
Seca5g00022 540 SMART ultradead3 98 298 IPR014001 -
Seca5g00022 540 Pfam Helicase conserved C-terminal domain 466 528 IPR001650 -
Seca5g00022 540 CDD FANCM_ID 309 421 IPR039686 GO:0006281|GO:0043138
Seca5g00022 540 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 11 535 - -
Seca5g00022 540 Pfam Type III restriction enzyme, res subunit 116 259 IPR006935 GO:0003677|GO:0005524|GO:0016787
Seca5g00022 540 CDD DEXDc_FANCM 100 281 IPR044749 GO:0005524
Seca5g00022 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 536 IPR027417 -
Seca5g00022 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 540 IPR001650 -
Seca5g00022 540 SMART helicmild6 451 529 IPR001650 -
Seca5g00022 540 Gene3D - 97 292 IPR027417 -
Seca5g00022 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 277 IPR014001 -
Seca5g00022 540 Gene3D - 388 538 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00022 Seca-Chr5 596419 605901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00022 470 527 Eukaryotic Initiation Factors Gene Family AT3G13920 36.207 2.40e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00022 K10896 - gmx:100820078 824.698