Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00004 ATGTTGGTTATCTATGTTTTATTGTTCCTGCTTATGGAACCTAACAAAACTCCAGATTCAGCACGACATAAAAGAGGATGCAATTGCAAGAAATCAAGCTGCCTGAAGAAATATTGTGAATTTTATCAGGGTGGTGTTGGTTGCTCTGTTAGCTGCAGATGTGAAGGGTGCAAGAACACATATGGTAGAAAGGATGGTTCTCCTCCTGCTGAAAGAGTAGCTGAACCTGAAGAAGAAACAAAAGCATATGAAAAGGGTGTAGTGGAAAGAGCTTCACAGAAAACTGAAATTCATAATATCAATGACCATCCAGATTGTGCTCTTCCCACAACACCATCATTGCTTACATTACCCTTTGATGCATCAAAGGGACATCAACCAGGATCTTTTGTTACTACCATCCCCTCTTCTGGGTTGTTTGGTGGCATTGGGAATTCAATTGCTTTTAGAAAAATCCCCCATCAAGTTAGTCTTACTTACCCTGCTGGCTTATGTAGTTTTGACATCAAAGAAGTCCTAAAACTGTCATGA 531 0.3992 MLVIYVLLFLLMEPNKTPDSARHKRGCNCKKSSCLKKYCEFYQGGVGCSVSCRCEGCKNTYGRKDGSPPAERVAEPEEETKAYEKGVVERASQKTEIHNINDHPDCALPTTPSLLTLPFDASKGHQPGSFVTTIPSSGLFGGIGNSIAFRKIPHQVSLTYPAGLCSFDIKEVLKLS. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00004 176 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 24 60 IPR005172 -
Seca5g00004 176 SMART CXC_2 22 63 IPR033467 -
Seca5g00004 176 MobiDBLite consensus disorder prediction 62 81 - -
Seca5g00004 176 ProSiteProfiles CRC domain profile. 1 62 IPR005172 -
Seca5g00004 176 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 13 115 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00004 Seca-Chr5 47610 48834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00004 13 151 CPP Transcription Factor Family AT3G22780 46.043 1.21e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca5g00004 TCR 7.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00004 - - gmx:100811662 191.045