Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00003 ATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGAGAAATTTTAAGGATGCTGGATCATCCTTTTCTTCCAACACTGTATGCACAGTTTACATCAGATAATCTGTCATGTCTGGCCATGGAGTATTGTCCAGGTGGAGATCTTCAATTCTTCATGTTCTACGACAGAAGCAGCTTGGCAGAAGTTTTTCAGAGCCAGCAGCAAGGTACAAAACTAAGAAATGTTCAGTAA 252 0.4048 MDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSDNLSCLAMEYCPGGDLQFFMFYDRSSLAEVFQSQQQGTKLRNVQ. 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00003 83 SUPERFAMILY Protein kinase-like (PK-like) 5 63 IPR011009 -
Seca5g00003 83 PANTHER FLIPPASE KINASE 1-RELATED 1 57 - -
Seca5g00003 83 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00003 Seca-Chr5 38973 39224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00003 1 56 AGC Kinase Gene Family AT3G52890 91.071 2.96e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca5g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00003 - K08286 csav:115709397 116.316