Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12212 ATGAAACTACAGGCACATATTCCGGGGCAGATATCAGGACAGGTACCTAACCAAGCTGGGTCTCAGTTGCCTGGACTGACCCAACTGAATGGGAATTCCCTCCCTCCACAGATGCCACCTTTAGGTGGTGTGCCTCGATCAACCATTAATATGGACCCGGAATTTCTTAGAGCACGCTCATTTATTCAAGAGAAGATATGTGATATGTTATTGCAACGGCATCAGCAGCCAGTCACAGAAGTACAGAGAAGGAAGCTTAAGGATCTTGCAAAACGCCTGGAGGAGGGAATGTTAAAAGCTGCTGTCTCTAAGGAGGACTATATGAACTTGGATACACTAGAGAGCCGTTTATCTAATTTCCTTAGACGAGCATCTATGAATAATCATAACCAACAGTATCCACAGCTTGTTAGCTCTTCTCCAATTGGTACTATGATACCAACCCCTGGTATGTCACACATTCCAAATTCAAGCATGGTGGTTGCATCTTCTATTGATACCTCAATAATTTCTGCCAGCGGGTGTAGTAGCATAGGATCAACATCTTTCAATAGTGTAAATATGTTACCAGCTGGTGGCATGCTTGGCAGTTTAAATAGATCTGATGGTTTGTCTAATGGATATCAGCAGTCTTCTACCAATTTTTCCGTTAGCTCGGGGGGAAACATGTCATCGATGGGGGTGCAGAGAATTGCAAGCCAGATGATTCCCACTCCAGGATTTACTGTCAGCAGTAATCACTCACATATGAATATAGATTCTTCAACTAATGGCAGTGCCTTTTCCAGTGTTGAGTCTACTATGGTATCACAGTCACAGCTGCAGCAGCAGAAGCAGAATGTTGGTGGCCAAGTGAGCAGTGGAATGAGATCTGGTTTACTACAAAAACCATTTGCAAACTCAAATGGTTCTATAAATAGTGGGGTAGGTTTGATTGGAAACAATATACAACTTGCAAATGAACCTGGCACTTCCGATGGTTACGCCTCAACTTATGCTAATTCTCCTAAACACTTACCACAGAACTTTGATCAAAATCAGAAACCAGTTGTGCAGGGTGATGGATATGGATTGAATAATGTTGACAGTTTTCCTTCTGGAAACATTTATGCATCTGCAACATCCTCTGGGTCTATGATGAACACTCAGAACACAAATTCAGTAAAATTGCCATCAATACCCAAAACTAGCTCATTGATAAGTGGTCACTCAAATTTGCATGGTATGCAGCAAACTGCTCATATGAAGTCTCAAGCAATTAATCAGTTGGAAAAGTTGAACTTTCAGTCTTCATTGACTTCAAGAGATGCCCTACTGCATTCTCAACAGCAGTATCAGCAGAGGCCCCAACAATTTCAACAGCCAGAGCAGTATGTGCAGCAACAATTTCAATTGAAGCTACAAAGTCAACAGCCTCAGCATTTGGTCAACAGTGATACTTTCAGTCAGTCTCAGATGTCTTCCAATCTAGAAACCCAAGTGAAATCTGAGCATGGAATCGAACACCATAAAGAAGTGCTCAATTCTCATGTTTCTGAACAGTTCCATATGTCTGAGATGCAGAGTCAGTACCAGCAGAACTCATCCGAAGAGTGCTCTAGGAGTGCTCAATATCTTTCATTTCCATCTGGTCAGCATGACTTAATCTCAACAACACCGCATAATTCGCAACAAATGTTGCACCCACACCAAGTGGTTGCAGAGTCTCAAAATAATTTTAGCTGTCTTAATGTTGGGGCACAATCCAAATCAGTAGGTCTAAATCAATGGCCTCAGTCACAAGATGGTAACCACATACCTGACAATATTTCACATGACCAGCATCTCCACATGGATTTTCATCAAAGAATATCAGGGCAGGATGAAGCTCAATGCAATAATTTATCATCAGATGTATCTGTTGTTGGTCACGCTGTTGCTTCTAGAGGCTCTGGTGAGCTGCTGGACTCAGGCAGTGCTATAAAAAAGGCACACAAGAATCAACAGAGGTGGCTTTTATTTCTACTTCATGCTCGACGATGCTCTGCTCCTGAAGGACGATGCCAAGAACGCTTTTGTTCTATTGCACAGAAGTTATGTAAGCACATAGATGGATGCACCCTGCGCCATTGTCCATATCCTCGTTGTCATCATACCAGGGTATTGCTTCATCATTTCATAAACTGCAGGGATCCATGTTGCCCAGTGTGTGTCTTTGTAAGAAATTATCGACGTGCATTTCAACTCAAGCCTCAGATTCGGCCAGAACCAGAATCAAGTTTGCCAATTGCAGTAAATGGATCATGTAAATCTTACAATGCTACAGTCACATCACCTAGATTGATCTCAAAGCCTCCAGTAGTCATTGAAACTTCAGAAGACTTGCACCCTTCTCTAAAACGCATAAAGATTGAGCATTGCACTCAATCTGTCAATCCTGAAAATGATAATTCTGCTTCATCTGTTTCTGCAAATTGCGAATCTCTTGTTTCCCGGGATGCTCAGTCCCAGGCGTATCCCAATGTTGAGAAAACCATCTCAATTAAATCTGAGTTTACAGAAGTGAAGGCTGAAGTTCCGACACATTTGGTACATGGAAAGCTTAGTGAGATGAAGATGGATAATGATAATGCAGATGATAAAATGTCTGATGGTGAACCTGTCAAATATGATAAGCCTGCTAATTTAGCTAGGCAAGAAAATATAAAAACAGAGAAAGAAGTTGGACAAGATAGGCAAGAAAATGTGATGCAGCCATCTGAAAATGCAGCTGGAACCAAGTCTGGTAAGCCAAAAATAAAGGGTGTCTCATTAACTGAATTATTTACCCCAGAGCAAGTCAGGGAGCATATAACTGGCCTCAGGCAATGGGTTGGTCAAAGCAAATCAAAAGCAGAGAAGAATCAAGCAATGGAACACACTATGAGTGAGAATTCCTGTCAATTGTGTGCTGTCGAGAAGCTTACTTTTGAACCACCACCTATTTACTGCACAACTTGTGGGGTTCGCATTAAGCGAAATAATATGTATTATACCATGGGTACTGGTGATACACGGCATTATTTTTGTATTCCGTGCTATAATGATGCTCGTACAGAGAACATCATTGTTGATGGGACTCCCATTGCTAAGTCAAGATTGGAAAAGAAGAAGAATGATGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCTTGGCAACATCAAATTTGTGCTTTATTTAATGGTAGAAGAAATGATGGTGGACAAGCTGAATATACTTGTCCTAACTGCTATATTGAAGAGGTAGAAAGAGGAGAGCGCAAGCCCTTACCCCAAACTGCTGTCCTTGGAGCAAAGGACTTGCCAAGGACTATTCTCAGTGATCATATAGAACAACGGTTGTTTAGACGACTAAAGCAAGAAAGACAAGAGAGGGCAAGGCTTCAAGGGAAAACTTATGATGAGGTACCTGGAGCTGAATGTCTTGTCATAAGAGTTGTGTCATCTGTTGACAAGAAGTTAGAAGTGAAACAGCGGTTTTTAGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTTCCATATAAATCCAAGGTAGTTTTGCTGTTTCAAAAGATTGAAGGTGTGGAAGTATGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGCCAATTTCCCAATCAGCGCCGGGTGTATCTTTCATATTTGGACTCTGTGAAATACTTTAGGCCTGAGATTAAAACAGTGACTGGAGAGGCTCTTCGGACATTTGTTTACCATGAAATTCTGATTGGATACCTTGAATATTGCAAGAAACGTGGTTTCACAAGCTGCTATATTTGGGCCTGTCCTCCATTGAAGGGTGAAGATTATATTTTATATTGCCATCCAGAAATACAGAAAACACCAAAATCCGATAAGCTTCGTGAGTGGTATCTATCCATGTTAAGAAAAGCTGCCAAGGAGAGTATTGTGGTCGATATCACCAACCTATACGATCATTTCTTCATATCTACTGGTGAATGTAGGGCTAAGGTTACAGCTGCAAGACTCCCTTATTTTGATGGTGACTACTGGCCTGGGGCTGCAGAGGATTTGATTTATCAGCTTCGCCAAGAGGAAGATGGAAGAAAACAAAATAAGAAAGGAACAACAAAAAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCAGGAAACGCCTCGAAAGATCTGCTTCTCATGCACAAACTTGGTGAAACAATTTCCCCAATGAAGGAAGATTTTATTATGGTTCATTTGCAGCATGCATGCACCCACTGTTGTATTCTATTGGTGTCTGGCAATCGTTGGGTGTGCAACCAGTGCAAAAATTTTCAGATTTGTGATAAGTGTTACGAAGCAGAGGTAAAGCGTGAAGAGAGAGAAAGACATCCTATTAATCAGAGAGAGAAACATACTCTTTATCCTGTTGAAATTACTGATGTACCATCTGATACAAAGGACAAAGATGATATTCTTGAGAGTGAATTCTTTGACACTAGACAGGCATTTCTGAGTCTCTGCCAGGGAAATCATTACCAGTATGATACACTAAGGCGGGCCAAGCATTCCTCAATGATGGTTCTCTATCATCTTCATAATCCAACCGCTCCTGCATTTGTGACAACTTGTAATATATGCTATCTTGACATAGAAACTGGTCAAGGTTGGCGTTGTGAGGTTTGCCCTGAGTATGATGTATGCAATGCTTGTTATCAAAAGGACGGAGGTGTTGATCATCCTCATAAGTTGACAAATCATCCATCGATGGTGGATCGTGATGCTCAAAATAAAGAAGCAAGGCAGCTTCGAGTATTGCAGCTACGGAAAATGCTTGATCTCCTTGTGCATGCATCCCAATGTCGTTCTGCGCATTGCCAATATCCAAATTGTCGCAAGGTCAAGGGGCTTTTTCGCCATGGGATGCACTGCAAAACACGTGCATCTGGTGGTTGTGTTCTGTGCAAGAAAATGTGGTATTTGCTTCAACTTCATGCTCGTGCTTGCAAAGAATCTGAATGCCACGTGCCACGATGCAGAGATTTGAAAGAACATTTAAGGAGGTTGCAGCAACAGTCTGATTCACGGCGTAGAGCTGCTGTAATGGAAATGATGAGGCAGAGAGCTGCAGAAGTTGCCAACAATGCTGGATGA 5166 0.4148 MKLQAHIPGQISGQVPNQAGSQLPGLTQLNGNSLPPQMPPLGGVPRSTINMDPEFLRARSFIQEKICDMLLQRHQQPVTEVQRRKLKDLAKRLEEGMLKAAVSKEDYMNLDTLESRLSNFLRRASMNNHNQQYPQLVSSSPIGTMIPTPGMSHIPNSSMVVASSIDTSIISASGCSSIGSTSFNSVNMLPAGGMLGSLNRSDGLSNGYQQSSTNFSVSSGGNMSSMGVQRIASQMIPTPGFTVSSNHSHMNIDSSTNGSAFSSVESTMVSQSQLQQQKQNVGGQVSSGMRSGLLQKPFANSNGSINSGVGLIGNNIQLANEPGTSDGYASTYANSPKHLPQNFDQNQKPVVQGDGYGLNNVDSFPSGNIYASATSSGSMMNTQNTNSVKLPSIPKTSSLISGHSNLHGMQQTAHMKSQAINQLEKLNFQSSLTSRDALLHSQQQYQQRPQQFQQPEQYVQQQFQLKLQSQQPQHLVNSDTFSQSQMSSNLETQVKSEHGIEHHKEVLNSHVSEQFHMSEMQSQYQQNSSEECSRSAQYLSFPSGQHDLISTTPHNSQQMLHPHQVVAESQNNFSCLNVGAQSKSVGLNQWPQSQDGNHIPDNISHDQHLHMDFHQRISGQDEAQCNNLSSDVSVVGHAVASRGSGELLDSGSAIKKAHKNQQRWLLFLLHARRCSAPEGRCQERFCSIAQKLCKHIDGCTLRHCPYPRCHHTRVLLHHFINCRDPCCPVCVFVRNYRRAFQLKPQIRPEPESSLPIAVNGSCKSYNATVTSPRLISKPPVVIETSEDLHPSLKRIKIEHCTQSVNPENDNSASSVSANCESLVSRDAQSQAYPNVEKTISIKSEFTEVKAEVPTHLVHGKLSEMKMDNDNADDKMSDGEPVKYDKPANLARQENIKTEKEVGQDRQENVMQPSENAAGTKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHTMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNDARTENIIVDGTPIAKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIEEVERGERKPLPQTAVLGAKDLPRTILSDHIEQRLFRRLKQERQERARLQGKTYDEVPGAECLVIRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEIKTVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKAAKESIVVDITNLYDHFFISTGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETISPMKEDFIMVHLQHACTHCCILLVSGNRWVCNQCKNFQICDKCYEAEVKREERERHPINQREKHTLYPVEITDVPSDTKDKDDILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICYLDIETGQGWRCEVCPEYDVCNACYQKDGGVDHPHKLTNHPSMVDRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNAG. 1722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12212 1721 MobiDBLite consensus disorder prediction 1369 1393 - -
Seca4g12212 1721 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g12212 1721 MobiDBLite consensus disorder prediction 866 924 - -
Seca4g12212 1721 MobiDBLite consensus disorder prediction 327 358 - -
Seca4g12212 1721 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1105 1541 IPR031162 GO:0004402
Seca4g12212 1721 SMART KAT11_2 1138 1435 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca4g12212 1721 MobiDBLite consensus disorder prediction 866 905 - -
Seca4g12212 1721 Pfam Zinc finger, ZZ type 1545 1587 IPR000433 GO:0008270
Seca4g12212 1721 SMART zz_5 1422 1466 IPR000433 GO:0008270
Seca4g12212 1721 SMART zz_5 1542 1588 IPR000433 GO:0008270
Seca4g12212 1721 FunFam Histone acetyltransferase of the CBP family 12 1419 1478 - -
Seca4g12212 1721 SUPERFAMILY RING/U-box 1403 1477 - -
Seca4g12212 1721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1040 1088 IPR013083 -
Seca4g12212 1721 Coils Coil 1121 1141 - -
Seca4g12212 1721 CDD PHD_HAC_like 1015 1087 - -
Seca4g12212 1721 Pfam TAZ zinc finger 1613 1683 IPR000197 -
Seca4g12212 1721 Pfam TAZ zinc finger 662 730 IPR000197 -
Seca4g12212 1721 ProSiteProfiles Zinc finger ZZ-type profile. 1423 1486 IPR000433 GO:0008270
Seca4g12212 1721 Gene3D TAZ domain 650 738 IPR035898 -
Seca4g12212 1721 SMART TAZ_2 1606 1684 IPR000197 -
Seca4g12212 1721 SMART TAZ_2 655 733 IPR000197 -
Seca4g12212 1721 PANTHER CBP/P300-RELATED 85 1712 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca4g12212 1721 ProSiteProfiles Zinc finger TAZ-type profile. 652 733 IPR000197 -
Seca4g12212 1721 SUPERFAMILY RING/U-box 1524 1592 - -
Seca4g12212 1721 SUPERFAMILY FYVE/PHD zinc finger 1049 1089 IPR011011 -
Seca4g12212 1721 FunFam Histone acetyltransferase HAC1-like protein 1600 1717 - -
Seca4g12212 1721 ProSitePatterns Zinc finger ZZ-type signature. 1548 1575 IPR000433 GO:0008270
Seca4g12212 1721 Gene3D - 1542 1596 IPR043145 -
Seca4g12212 1721 FunFam Histone acetyltransferase HAC1 1542 1593 - -
Seca4g12212 1721 Gene3D - 1419 1478 IPR043145 -
Seca4g12212 1721 Pfam PHD-finger 1046 1088 IPR019787 -
Seca4g12212 1721 SUPERFAMILY TAZ domain 657 737 IPR035898 -
Seca4g12212 1721 MobiDBLite consensus disorder prediction 247 295 - -
Seca4g12212 1721 Gene3D TAZ domain 1600 1717 IPR035898 -
Seca4g12212 1721 SUPERFAMILY TAZ domain 1605 1688 IPR035898 -
Seca4g12212 1721 ProSitePatterns Zinc finger PHD-type signature. 1016 1087 IPR019786 -
Seca4g12212 1721 Pfam Histone acetylation protein 1145 1366 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca4g12212 1721 ProSiteProfiles Zinc finger ZZ-type profile. 1543 1596 IPR000433 GO:0008270
Seca4g12212 1721 ProSiteProfiles Zinc finger TAZ-type profile. 1603 1686 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12212 Seca-Chr4 263043683 263064031 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Seca4g12212 HAT_KAT11 6.3e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12212 K04498 - gmx:100809207 3063.48