Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12211 ATGTGTGGAGGTGCTATTATCTCCGACTTCATCCCGGCGGCGACCAGTGGTTCCCGGCGTGTGACCGCCGACATCCTGTGGCCGAACTTGAGGAAACCCAGTTCGAGGAAACAGTTGTCTAAGCCACTGTTGTTGGACGATGACTTCGAGGCTGGTTTCAGAGAATTCAAGGATGATTCTGACTTCGAGGAAGACGAGGAGGACTATGATGACATGATGGTCGGTGCTAAGGGATTTGCCTTTGGTCTCTCCAAGACCAAGCCTTCCAAGTCCCTCTCTCGTGAAGAATCAACTGCTGCAAAATCCGTGGATTTTGATGACCAAGCTGAGAAGTCTGCTAAGAGAGAGAGGAAGAATCAGTATAGGGGGATCCGCCAGCGTCCATGGGGAAAGTGGGCAGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTTAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGGATTCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGATGGTGCTCCAGTTTCTTCCTCAAAACGTGCCAAGGCAAATCCACAGGAGCAGGTGCTGAAGGGAAATCTGAACTCTGTTATGCCCAAAGTGAACAAGATGTTTAATTTTGGTGACAATCCGGAGGACTACTACTCCACTATGGATCAGATGGAACAGAAACCACAGGTTAACCACCAGTATGCTAACATGGGGCCCTTCCCTGGAAATAGTGCTCAGTACTCTCCCCTTACTGCATCTGCTGATGTTACTGCTTATTTCAGTTCAGACCATTCAAGCAATTCATTTGATTATTCTGATCTGGGATGGTGTGAACAGGGCCCAAAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCTCTGGAATGTGAATCTCAGTTTGTGCAGGGTGCTAATCAGCAGAATAACCTGCAGTCTGACTCTCAGGATGTGCTACCCATACAAGATGAATCTGCAAAGACACTATCTGAGGAGCTTGCAGATATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTATCTCGATGGGAGCTGGGATGATGCTTCATTGGCATCCTTGCTCAACGGAGATGCAACTCAGGATGGTGGAAACCCAATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATTGCAGGCGGAGTTTTCTGA 1179 0.4869 MCGGAIISDFIPAATSGSRRVTADILWPNLRKPSSRKQLSKPLLLDDDFEAGFREFKDDSDFEEDEEDYDDMMVGAKGFAFGLSKTKPSKSLSREESTAAKSVDFDDQAEKSAKRERKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDGAPVSSSKRAKANPQEQVLKGNLNSVMPKVNKMFNFGDNPEDYYSTMDQMEQKPQVNHQYANMGPFPGNSAQYSPLTASADVTAYFSSDHSSNSFDYSDLGWCEQGPKTPEISSMLSAPLECESQFVQGANQQNNLQSDSQDVLPIQDESAKTLSEELADIESQLKFFETPYLDGSWDDASLASLLNGDATQDGGNPMNLWSFDDLPSIAGGVF. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12211 392 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Seca4g12211 392 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Seca4g12211 392 MobiDBLite consensus disorder prediction 90 124 - -
Seca4g12211 392 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Seca4g12211 392 CDD AP2 120 178 IPR001471 GO:0003700|GO:0006355
Seca4g12211 392 MobiDBLite consensus disorder prediction 90 123 - -
Seca4g12211 392 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Seca4g12211 392 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Seca4g12211 392 FunFam Ethylene-responsive transcription factor 2 119 178 - -
Seca4g12211 392 PANTHER DNA-BINDING DOMAIN 95 279 IPR044808 GO:0003700|GO:0009873
Seca4g12211 392 Gene3D AP2/ERF domain 119 178 IPR036955 GO:0003700|GO:0006355
Seca4g12211 392 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12211 Seca-Chr4 263035773 263041329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12211 1 392 AP2-EREBP Transcription Factor Family AT1G53910 44.988 6.17e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g12211 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12211 K09286 - gmx:100818646 479.559