Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12205 ATGACAAAGGTGGTAGTGAGCGTGTCGGGAAAACTGAAGCTGAAGGAATCTCAGTTCATAAATAAGTCTCTACCAGCACTTGGTGATGTTATTTCAGCTCTTGCATCCAAATCAGCCCACATACCTTACAGAACTCGAAGCTCACTCATGCTCCAGAGCTCTTTAGATGAGGATTCATTTCAGCACTATGCCCCTTTGGGGATCACTCCTCCAAGATTTGTAAGTTATGAATTCCAGATGCAGTATGGATCTATTGGTTGGTCAGAAGGTGCTACTCTTGGATATGCACAGGCTGCACCAGATAAGCGTGTAGTTGCTTGCATTGGTGATGGTAGTTTTCAGGTTAGTAAGATAATAAGAATTGGAACTATCTACGAATCCAGAATATTAACGATAATATGCAACTGTTTTTCTTTTTATAAAGTCTTTAACCAAGACTATGGAACTTACCTTATTCAGGTGACAGCACAGGATATTTCAACAATGATCCGAGGTGGACAAAGGAGCATCATCTTCCTCATTAATAATGGAGGTGGAGATTGCAAAACTCTAATGTTTGTCCAGATACGTCCAAGTAAAGCAAGACCTGACTGTCCATCTCCAGAAATAAATAGAAGCAAGAAAGTCTTTGGATTCCATTCTTTCGTTCCTGTCACAGACACAGCTCGTGTTCTTGTCACCGATATTGCAGATGATATCATGTTTCATGGTTTAGAGCTGTGA 723 0.4066 MTKVVVSVSGKLKLKESQFINKSLPALGDVISALASKSAHIPYRTRSSLMLQSSLDEDSFQHYAPLGITPPRFVSYEFQMQYGSIGWSEGATLGYAQAAPDKRVVACIGDGSFQVSKIIRIGTIYESRILTIICNCFSFYKVFNQDYGTYLIQVTAQDISTMIRGGQRSIIFLINNGGGDCKTLMFVQIRPSKARPDCPSPEINRSKKVFGFHSFVPVTDTARVLVTDIADDIMFHGLEL. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12205 240 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 71 132 IPR011766 GO:0003824|GO:0030976
Seca4g12205 240 Gene3D Kinesin motor domain 4 58 IPR036961 -
Seca4g12205 240 PANTHER PYRUVATE DECARBOXYLASE 71 129 IPR012110 GO:0016831
Seca4g12205 240 Pfam Kinesin motor domain 10 57 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g12205 240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 59 IPR027417 -
Seca4g12205 240 ProSiteProfiles Kinesin motor domain profile. 1 44 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g12205 240 Gene3D - 59 227 - -
Seca4g12205 240 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 59 116 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12205 Seca-Chr4 262967168 262969947 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12205 3 53 Calmodulin-binding Proteins AT5G65930 56.863 1.23e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12205 K01568 - jre:108995175 107.071