Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12201 ATGTTGAAGTCTGGGAACCGAGTCAGATCTGTTGGATCCACTAGTGCTAATGAGCTTAGCAGTTGGTCTCATTGTTTGTTGCGAGTAACTGTTATCGGGGAGAATTTGATCAATGGCCAAAGAACAAGGAGTCATCTATGGCTAGTAGACTTAGCAGGTAGTGAGCGTGTGGGGAAAACTGAAGCTGAAGGAGAAAGGCTAAAGGAATCTCAGTTCATAAATAAAACTCTATCAGCACTTGGTGATGTTATTTCAGCTCTTGCGTCCAAATCAGCCCACATACCTTACAGGAACTCGAAGCTCACTCATATACTCCAGAGCTCTTTAGGTGAGGATTCATTTCAGCACTATGCTCCTTTGGGGATGACTCCTCCAAGATTTGATTTACATCTAAATTTTGGTGCTTTATATATGATAATACAATCTAATTGTGGAGATTGCAAAACTTTAATGTCTGTCCATATACTTCCAAATAAAGCAGATCTGACAGTGTTCACTGAATTTTGCAAAACTCTAATGTTTGACCTCATTGGGTTCTTCTTTGGATATCTTGTTAATGGAATCTGTGAGGTATATTATATGCTTTGTTCTCTGTTGGCTTTCTTGAAGTCTTTTACTTGTTTTCTGCTGCTTTGTTGTTTTATCTGTTTTCCTCATTTTCTTAATCTGAAAAGCCCAAGTTTTCTTGATCTGCAATTTTTCATTATTTTTCTGTTTAGCTTTCTAATCTCAATAATTTGCTTTCCAATCTTTGTTCCATTCTTTCACAGACTGAAGCTGAAGCGTGGCATTGCCATCTCCACAAATAAATAG 813 0.3776 MLKSGNRVRSVGSTSANELSSWSHCLLRVTVIGENLINGQRTRSHLWLVDLAGSERVGKTEAEGERLKESQFINKTLSALGDVISALASKSAHIPYRNSKLTHILQSSLGEDSFQHYAPLGMTPPRFDLHLNFGALYMIIQSNCGDCKTLMSVHILPNKADLTVFTEFCKTLMFDLIGFFFGYLVNGICEVYYMLCSLLAFLKSFTCFLLLCCFICFPHFLNLKSPSFLDLQFFIIFLFSFLISIICFPIFVPFFHRLKLKRGIAISTNK. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12201 270 ProSiteProfiles Kinesin motor domain profile. 1 110 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g12201 270 PRINTS Kinesin heavy chain signature 14 31 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g12201 270 PRINTS Kinesin heavy chain signature 94 115 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g12201 270 PRINTS Kinesin heavy chain signature 45 63 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g12201 270 Gene3D Kinesin motor domain 1 174 IPR036961 -
Seca4g12201 270 ProSitePatterns Kinesin motor domain signature. 44 55 IPR019821 GO:0003777|GO:0005524|GO:0007018
Seca4g12201 270 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 174 IPR027640 GO:0003777|GO:0007018
Seca4g12201 270 Pfam Kinesin motor domain 1 113 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g12201 270 SMART kinesin_4 1 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g12201 270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 114 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12201 Seca-Chr4 262815000 262816186 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12201 1 113 Calmodulin-binding Proteins AT5G65930 50.442 3.89e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12201 K10406 - gmx:100808603 211.075