Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12194 ATGCACCACAACCTCGCAAGGTTGTGGATTGCTTTGCTTGCGGTATCATTAACCGCAGTTCATTGCAAAACTGCCTCGCGAGATGTTTCAGCCCTTAATGTGATGTATACCAGCTTAAATTCGCCTTCACGACTGAGTGGCTGGAAATCAAGCGGAGGTGATCCTTGTGGCGACTCTTGGGAAGGAATCAGATGCTCAGGCTCCTCTGTCACAGAAATAAATTTGTCTGACATGGGACTTACTGGATCAATGGGGTACCAGTTGTCGAGCTTAACATCTGTTACCTACTTTGACTTGAGCAACAACAACCTCAAGGGTGATATACCGTATCAACTCCCTCCAAATGCTCATTACGTAGATCTTTCTAAGAATGGCTTCACTGGAGATGTACCTTACTCCATTTCTCAGATGAGTGACCTCAACCACCTAAATCTTGCACATAATCGGCTCAATAACCAGTTGGGCGATATGTTTGGGAAACTCACTAAACTAAAACAATTGGATGTGTCATTCAATTCACTATCAGGAAACCTACCTCGGAGTTTTAAATCACTCACAAGCCTCAAGAAGTTGCATCTGGAAAACAATCATTTTTCTGGTTCAGTAAATGTCCTTGCCAACCTTCCACTTGATGATTTGAATATTGAAAATAACAAATTTACTGGTTGGTTCCCTGAGGAGTTAAAGGATATAAATAGCTTGCAAACTGGAGGAAACTCTTGGTCAACTGCACCAGCGCCACCTCCTCCTCCTGGTACACCTCCTATCAAGCATTCCGTGAAAAAGAGTGAAAAATCTGTTCTTAGTGGAGTAGCTATAGCAGGCATAGTTTTTGGTGTGCTGGTGGTAATTGTAACCATTGTTGCTTTTTCTAAAAGAAGAAGGTCATCTTTACCTTCTTCACATTTTATTGATGAAGAAAGGCACAGCCAGCACAGATCTTTTACTCCCCTTGCATCTCAGGAGTTATCCAAAGATTTGGGTGCTGATGCCAGCAAAGAATACAAAGGATTTGAGTCATTGGATTCCACTTCAATTGACATAAAGGCCTTGCAGAAAACTCCATCAATTAGTGTTAGGTCCTCAGTCTCTGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGCACATCAATCCGTTGTACTCCCTTTTCATTGGCAGAGTTGCAGACTGGTACTGCTAATTTTGCCTCAGGTCGACTTCTTGGTGAAGGATCTATTGGATGTGTTTATCGAGCCAAATATGCTGAAGGAAAGGTGTTGGCTGTAAAAAAAATCAACGCTTCACTTTTTAATGGTGGTCGTCCTGAGGAATTCTCTCAGATTGTTTCAAACATATGCAAACTTCGTCATCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAGCAGGAGCACATGTTAATATATGATTATTTCAGAAATGGCTCTCTCCACGACTTTTTACATTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACCAGAGTCAGAATTGCACTGGGAACTGCTCGGGCTGTTGAGTTAGTCTATGTTTAG 1566 0.4157 MHHNLARLWIALLAVSLTAVHCKTASRDVSALNVMYTSLNSPSRLSGWKSSGGDPCGDSWEGIRCSGSSVTEINLSDMGLTGSMGYQLSSLTSVTYFDLSNNNLKGDIPYQLPPNAHYVDLSKNGFTGDVPYSISQMSDLNHLNLAHNRLNNQLGDMFGKLTKLKQLDVSFNSLSGNLPRSFKSLTSLKKLHLENNHFSGSVNVLANLPLDDLNIENNKFTGWFPEELKDINSLQTGGNSWSTAPAPPPPPGTPPIKHSVKKSEKSVLSGVAIAGIVFGVLVVIVTIVAFSKRRRSSLPSSHFIDEERHSQHRSFTPLASQELSKDLGADASKEYKGFESLDSTSIDIKALQKTPSISVRSSVSDCVQSFNDNEFANRLNARRSTSIRCTPFSLAELQTGTANFASGRLLGEGSIGCVYRAKYAEGKVLAVKKINASLFNGGRPEEFSQIVSNICKLRHPNIAELVGYCSEQEHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGTARAVELVYV. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12194 521 Gene3D Ribonuclease Inhibitor 23 265 IPR032675 -
Seca4g12194 521 SUPERFAMILY L domain-like 26 235 - -
Seca4g12194 521 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Seca4g12194 521 Pfam Protein tyrosine and serine/threonine kinase 407 517 IPR001245 GO:0004672|GO:0006468
Seca4g12194 521 Gene3D Transferase(Phosphotransferase) domain 1 384 519 - -
Seca4g12194 521 SUPERFAMILY Protein kinase-like (PK-like) 390 517 IPR011009 -
Seca4g12194 521 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 369 480 - -
Seca4g12194 521 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Seca4g12194 521 CDD TM_EGFR-like 269 298 - -
Seca4g12194 521 MobiDBLite consensus disorder prediction 235 261 - -
Seca4g12194 521 ProSiteProfiles Protein kinase domain profile. 404 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g12194 521 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 517 IPR046959 -
Seca4g12194 521 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12194 Seca-Chr4 262724342 262732466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12194 1 520 Strubbelig Receptor Gene Family AT1G78980 56.818 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca4g12194 PK_Tyr_Ser-Thr 4.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12194 - - gmx:100785529 788.489