Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g12177 ATGCCTGCCGTTTACGGTGCTCGCTTGACCACCTTCGAAGACTCCGAGAAGGAGAGTGAATACGGTTACGTTCGCAAGGTATCAGGACCAGTCGTGGTTGCAGATGGCATGGCTGGGGCTGCTATGTATGAACTGGTCCGTGTTGGTCGTGATAATCTCATTGGTGAAATTATTCGTCTGGAAGGGGACTCTGCTACTATCCAAGTTTATGAGGAAACGGCTGGTTTAATGGTTAATGATCCTGTATTACGAACACACAAGCCTTTGTCCGTGGAGTTGGGGCCTGGAATATTGGGAAATATTTTTGATGGAATTCAGAGGCCTCTGAAAACTATTGCTAAAAGATCTGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCAGCACTTGACAAAGACACACTTTGGGAATTTCAGCCTAAGAAAATTGGTGAAGGAGACCTCTTAACTGGTGGAGACTTATATGCTACTGTTTTTGAGAACAGTCTAATGCAACACCATATTGCACTCCCTCCTGATGCCATGGGAAAAATTACCTACATTGCACCAGCTGGCCAATATTCCTTGAAGGATACTGTGTTGGAGCTTGAGTTTCAAGGTGTCAAAAAGAAGTTCACCATGCTTCAGACTTGGCCTGTACGTACACCAAGGCCCGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTTACTGGTCAGCGTGTTCTTGATGCCCTTTTCCCCTCCGTTCTTGGTGGGACTTGTGCCATACCTGGAGCTTTTGGTTGTGGTAAAACTGTCATTAGTCAGGCTCTTTCTAAGTATTCCAATTCTGATGCTGTTGTTTACGTTGGTTGTGGGGAACGTGGAAATGAAATGGCAGAGGCATGCTTCCTTTTTAGTTACTTTTATCAAATATCTGTTTGTTATTATTATGCAGTTGGTAAAAACAATTTAATGATTGTTCAGGTTCTGATGGACTTTCCACAACTTACAATGACATTACCTGATGGCCGTGAAGAATCTGTCATGAAACGTACAACATTAGTGGCTAACACTTCAAACATGCCGGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATCACTTTAGCTGAGTATTTTAGAGATATGGGCTATAATGTCAGCATGATGGCAGATTCAACATCTAGGTGGGCAGAGGCATTGCGTGAAATCTCTGGACGGCTGGCTGAAATGCCTGCAGATAGTGGATATCCTGCTTACCTGGCTGCACGTTTAGCCTCTTTCTATGAACGTGCTGGGAAAGTAAAATGTCTCGGAGGTCCCGAACGTACTGGTAGTGTAACCATTGTTGGTGCTGTTTCCCCACCTGGTGGAGATTTCTCAGATCCTGTGACATCTGCAACCCTCAGCATTGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCACAGAGGAAGCATTTTCCTTCTGTGAACTGGCTTATTTCTTACTCAAAGTACTCAACGGCACTCGAATCCTTTTATGAGCAATTCGATCCAGATTTTATAAACATTAGGACAAAGGCTCGTGAAGTTCTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAGCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAAAATGCTTTTACACCATATGACAAATTCTGTCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCTAATCAGGCTGTAGAGAGGGGAGCTGGTACTGATGGTCAGAAAATAACTTACACCCTTATCAAGCATCGTATGGGAGATCTCTTCTATCGTTTAGTGTCTCAGAAATTTGAGGATCCAGCAGAAGGTGAAGCTGCTTTGGTTGAAAAATTCAAGAAGTTACATGAGGACCTGACTAATGGTTTCCGCAACCTTGAGGATGAAACCCGATAA 1956 0.4351 MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHIALPPDAMGKITYIAPAGQYSLKDTVLELEFQGVKKKFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEACFLFSYFYQISVCYYYAVGKNNLMIVQVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGTDGQKITYTLIKHRMGDLFYRLVSQKFEDPAEGEAALVEKFKKLHEDLTNGFRNLEDETR. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g12177 651 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 301 486 IPR000194 GO:0005524
Seca4g12177 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 490 IPR027417 -
Seca4g12177 651 Gene3D - 135 194 - -
Seca4g12177 651 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Seca4g12177 651 CDD V_A-ATPase_A 88 488 - -
Seca4g12177 651 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Seca4g12177 651 Coils Coil 629 649 - -
Seca4g12177 651 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Seca4g12177 651 Hamap V-type ATP synthase alpha chain [atpA]. 19 650 IPR022878 GO:0046034|GO:0046961
Seca4g12177 651 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 649 IPR022878 GO:0046034|GO:0046961
Seca4g12177 651 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Seca4g12177 651 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 499 582 - -
Seca4g12177 651 CDD ATP-synt_V_A-type_alpha_C 503 609 - -
Seca4g12177 651 FunFam V-type proton ATPase catalytic subunit A 487 640 - -
Seca4g12177 651 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Seca4g12177 651 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Seca4g12177 651 Gene3D - 487 640 IPR024034 -
Seca4g12177 651 Gene3D - 20 89 IPR023366 -
Seca4g12177 651 ProSitePatterns ATP synthase alpha and beta subunits signature. 477 486 IPR020003 GO:0005524
Seca4g12177 651 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 289 IPR000194 GO:0005524
Seca4g12177 651 Gene3D - 195 486 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g12177 Seca-Chr4 262541930 262547728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g12177 1 651 Primary Pumps ATPases(2) AT1G78900 90.169 0.0 1203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g12177 K02145 - gmx:100775727 1209.13